Pre_GI: BLASTP Hits

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Query: NC_004463:925140:948323 Bradyrhizobium japonicum USDA 110, complete genome

Start: 948323, End: 949891, Length: 1569

Host Lineage: Bradyrhizobium diazoefficiens; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain was isolated from Glycine hispida in 1959 in Florida, USA, and has been widely studied because of its superior symbiotic nitrogen fixation with soybeans as compared to other strains. This strain contains a 681 Kb symbiosis island that contains genes for nitrogen fixation and root nodule formation. The chromosome also contains genes resembling those of type III and IV secretion systems.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007494:1:97379737113081572Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequencerecombinase0672
NC_009050:567209:5855105855105870811572Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequenceRecombinase0671
NC_008358:2638245:2673229267322926748061578Hyphomonas neptunium ATCC 15444, complete genomesite-specific recombinase, resolvase family0656
NC_010725:3315007:3340397334039733418901494Methylobacterium populi BJ001, complete genomeRecombinase8e-174610
NC_007651:72952:8089780897824621566Burkholderia thailandensis E264 chromosome I, complete sequencerecombinase4e-170598
NC_019973:6102442:6116952611695261185261575Mesorhizobium australicum WSM2073, complete genomesite-specific recombinase, DNA invertase Pin8e-169593
NC_011992:3375929:3389131338913133906961566Acidovorax ebreus TPSY, complete genomeRecombinase1e-167590
NC_008826:170609:1715051715051730701566Methylibium petroleiphilum PM1 plasmid RPME01, complete sequenceputative recombinase1e-167589
NC_008825:1258500:1289040128904012906051566Methylibium petroleiphilum PM1, complete genomeputative recombinase1e-167589
NC_007794:561623:5686745686745702481575Novosphingobium aromaticivorans DSM 12444, complete genomeRecombinase4e-166584
NC_003064:22535:4258542585441411557Agrobacterium tumefaciens str. C58 plasmid AT, complete sequencehypothetical protein2e-162572
NC_008825:3161146:3169372316937231709371566Methylibium petroleiphilum PM1, complete genomeputative recombinase2e-162572
NC_003306:22228:4227842278437951518Agrobacterium tumefaciens str. C58 plasmid AT, complete sequencerecombinase2e-162572
NC_005773:106000:1111381111381127091572Pseudomonas syringae pv. phaseolicola 1448A, complete genomerecombinase4e-162571
NC_004578:20738:4275442754443101557Pseudomonas syringae pv. tomato str. DC3000, complete genomerecombinase, putative1e-158560
NC_004578:212468:2158072158072173631557Pseudomonas syringae pv. tomato str. DC3000, complete genomerecombinase, putative1e-158560
NC_015381:1:7939793995101572Burkholderia gladioli BSR3 chromosome 1, complete sequencerecombinase4e-158558
NC_007651:3064530:3156665315666531582511587Burkholderia thailandensis E264 chromosome I, complete sequencerecombinase2e-157555
NC_012660:5793200:5821828582182858233931566Pseudomonas fluorescens SBW25 chromosome, complete genomeputative recombinase4e-154545
NC_020209:4768500:4797153479715347985741422Pseudomonas poae RE*1-1-14, complete genomerecombinase2e-146519
NC_009708:915814:9260369260369275951560Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeresolvase family site-specific recombinase4e-131468
NC_015675:3046852:3047676304767630492381563Mesorhizobium opportunistum WSM2075 chromosome, complete genomeRecombinase8e-125447
NC_009801:2898426:2907967290796729095231557Escherichia coli E24377A, complete genomesite-specific recombinase, resolvase family3e-122439
NC_012967:2669182:2678929267892926804851557Escherichia coli B str. REL606 chromosome, complete genomeRecombinase7e-122437
NC_012947:1106000:1114312111431211158681557Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeRecombinase7e-122437
NC_016514:3573400:3582095358209535836721578Enterobacter cloacae EcWSU1 chromosome, complete genomeresolvase family site-specific recombinase2e-120433
NC_011283:4438500:4472973447297344745081536Klebsiella pneumoniae 342 chromosome, complete genomesite-specific recombinase, resolvase family5e-117421
NC_009436:3117661:3127108312710831286641557Enterobacter sp. 638, complete genomerecombinase2e-114412
NC_010814:1441327:1443079144307914446831605Geobacter lovleyi SZ, complete genomeRecombinase7e-114411
NC_020453:1072979:1080316108031610819381623Agromonas oligotrophica S58 DNA, complete genomerecombinase2e-105383
NC_008686:405159:433296433296434282987Paracoccus denitrificans PD1222 chromosome 1, complete sequenceRecombinase9e-101367
NC_009445:467682:4925524925524941831632Bradyrhizobium sp. ORS 278 chromosome, complete genomerecombinase5e-100365
NC_017249:18493:2978729787313671581Bradyrhizobium japonicum USDA 6, complete genomerecombinase2e-94347
NC_004463:18497:2979229792313721581Bradyrhizobium japonicum USDA 110, complete genomerecombinase2e-94347
NC_007404:359764:3656513656513666701020Thiobacillus denitrificans ATCC 25259, complete genomehypothetical protein2e-93343
NC_014562:2563466:257245425724542573434981Pantoea vagans C9-1 chromosome, complete genomerecombinase1e-62241
NC_016627:793583:7976187976187991341517Clostridium clariflavum DSM 19732 chromosome, complete genome2e-24114
NC_014538:2158131:2183214218321421847341521Thermoanaerobacter sp. X513 chromosome, complete genomeRecombinase4e-24113
NC_010338:650054:670289670289670762474Caulobacter sp. K31, complete genomeResolvase domain2e-22107
NC_007644:280000:2846452846452860961452Moorella thermoacetica ATCC 39073, complete genome3e-20100
NC_014394:1815638:1825770182577018274041635Gallionella capsiferriformans ES-2 chromosome, complete genomeResolvase domain1e-1894.7
NC_013890:103807:1038071038071052641458Dehalococcoides sp. GT chromosome, complete genome9e-1892
NC_002936:1395432:1398114139811413997781665Dehalococcoides ethenogenes 195, complete genomeresolvase domain protein4e-1686.7
NC_013552:207345:2073452073452090361692Dehalococcoides sp. VS, complete genomeresolvase domain protein, PinR type1e-1585.1
NC_010003:449192:4643804643804659481569Petrotoga mobilis SJ95, complete genomeResolvase domain1e-1585.1
NC_016627:4323370:4327812432781243293801569Clostridium clariflavum DSM 19732 chromosome, complete genomesite-specific recombinase, DNA invertase Pin2e-1584.3
NC_014410:800500:8355538355538371211569Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,Resolvase domain2e-1584.3
NC_004668:2198027:2204960220496022065731614Enterococcus faecalis V583, complete genomesite-specific recombinase, resolvase family, putative3e-1583.6
NC_010337:2793667:2815262281526228168361575Heliobacterium modesticaldum Ice1, complete genomeDNA recombinase, putative4e-1583.6
NC_013890:103807:1052911052911069101620Dehalococcoides sp. GT chromosome, complete genomeResolvase domain protein6e-1582.8
NC_016627:4270949:4288360428836042899281569Clostridium clariflavum DSM 19732 chromosome, complete genomesite-specific recombinase, DNA invertase Pin6e-1582.8
NC_009455:273519:3106353106353122811647Dehalococcoides sp. BAV1 chromosome, complete genomeresolvase domain-containing protein9e-1582
NC_010125:2998619:3006108300610830077691662Gluconacetobacter diazotrophicus PAl 5, complete genomeputative DNA recombinase2e-1481.3
NC_011666:2109274:2112431211243121141161686Methylocella silvestris BL2, complete genomeResolvase domain protein2e-1481.3
NC_015976:2187377:2193567219356721952611695Sphingobium sp. SYK-6, complete genomeputative recombinase2e-1480.9
NC_008686:95326:9609496094977431650Paracoccus denitrificans PD1222 chromosome 1, complete sequenceRecombinase8e-1479
NC_011365:1171536:1204634120463412063221689Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeResolvase domain2e-1377.4
NC_011365:1103927:1118847111884711205561710Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomerecombinase6e-1375.9
NC_016048:2678205:2695235269523526969171683Oscillibacter valericigenes Sjm18-20, complete genomeputative site-specific recombinase1e-1275.1
NC_014376:3547218:3566356356635635680141659Clostridium saccharolyticum WM1 chromosome, complete genomeRecombinase3e-1273.9
NC_014538:1598106:1601171160117116027421572Thermoanaerobacter sp. X513 chromosome, complete genomeResolvase domain-containing protein3e-1273.9
NC_010320:1268355:1311640131164013132111572Thermoanaerobacter sp. X514 chromosome, complete genomeresolvase domain-containing protein3e-1273.9
NC_010125:955863:9861399861399878451707Gluconacetobacter diazotrophicus PAl 5, complete genomeputative resolvase5e-1273.2
NC_009720:251703:2779762779762796311656Xanthobacter autotrophicus Py2, complete genomeresolvase domain-containing protein7e-1272.4
NC_006322:4149500:4174019417401941752631245Bacillus licheniformis ATCC 14580, complete genomeSpoIVCA7e-1272.4
NC_006270:4149004:4173904417390441751481245Bacillus licheniformis ATCC 14580, complete genomesite-specific DNA recombinase7e-1272.4
NC_015675:2247960:2274308227430822759331626Mesorhizobium opportunistum WSM2075 chromosome, complete genomeRecombinase1e-1172
NC_010125:2884762:2898971289897129007551785Gluconacetobacter diazotrophicus PAl 5, complete genomeputative DNA recombinase2e-1171.2
NC_016027:2446806:2457542245754224592301689Gluconacetobacter xylinus NBRC 3288, complete genomeDNA resolvase2e-1171.2
NC_015278:176508:1893931893931910631671Aerococcus urinae ACS-120-V-Col10a chromosome, complete genomeresolvase, N-terminal domain protein3e-1170.5
NC_014217:800406:8029988029988047251728Starkeya novella DSM 506 chromosome, complete genomeResolvase domain protein4e-1170.1
NC_015977:2309873:2331366233136623330421677Roseburia hominis A2-183 chromosome, complete genomesite-specific recombinase4e-1170.1
NC_010125:74904:8646786467880771611Gluconacetobacter diazotrophicus PAl 5, complete genome4e-1170.1
NC_009012:3823879:10410417231620Clostridium thermocellum ATCC 27405, complete genomeRecombinase5e-1169.7
NC_009012:1:10410417231620Clostridium thermocellum ATCC 27405, complete genomeRecombinase5e-1169.7
NC_010125:955863:9679829679829696491668Gluconacetobacter diazotrophicus PAl 5, complete genomePutative DNA recombinase5e-1169.7
NC_012471:1197534:120630712063071207161855Streptococcus equi subsp. equi 4047, complete genomeconjugative transposon site-specific recombinase6e-1169.7
NC_014614:2643203:2648799264879926504481650Clostridium sticklandii, complete genomesite-specific DNA recombinase (modular protein)1e-1068.6
NC_021064:2001786:2010750201075020123061557Propionibacterium avidum 44067, complete genomeresolvase1e-1068.2
NC_014625:1187608:1204334120433412058811548Ketogulonicigenium vulgare Y25 chromosome, complete genomeresolvase2e-1067.8
NC_014639:3520874:3536937353693735386251689Bacillus atrophaeus 1942 chromosome, complete genomeresolvase domain-containing protein3e-1067.4
CP002207:3520874:3536937353693735386251689Bacillus atrophaeus 1942, complete genomeresolvase domain protein3e-1067.4
NC_011365:1171536:1189109118910911908451737Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeResolvase domain3e-1067
NC_015312:848403:8526538526538543411689Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeResolvase domain-containing protein3e-1067
NC_007432:654904:7003617003617017071347Streptococcus agalactiae A909, complete genomeprophage LambdaSa04, site-specific recombinase, resolvase family4e-1066.6
NC_008686:95326:9763697636994291794Paracoccus denitrificans PD1222 chromosome 1, complete sequenceRecombinase5e-1066.2
NC_014624:2668157:2710067271006727116891623Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein1e-0965.5
NC_006582:2944237:2992454299245429938571404Bacillus clausii KSM-K16, complete genomesite-specific recombinase for integration and excision1e-0965.1
NC_016048:2873669:2896091289609128977101620Oscillibacter valericigenes Sjm18-20, complete genomeputative site-specific recombinase1e-0964.7
NC_009455:1025915:1030391103039110319051515Dehalococcoides sp. BAV1 chromosome, complete genomeresolvase domain-containing protein2e-0964.3
NC_010581:2999002:3031691303169130333341644Beijerinckia indica subsp. indica ATCC 9039, complete genome3e-0963.9
NC_013209:2582878:259456625945662595432867Acetobacter pasteurianus IFO 3283-01, complete genomeDNA resolvase3e-0963.5
NC_011958:735755:7525167525167541351620Rhodobacter sphaeroides KD131 chromosome 2, complete genomehypothetical protein5e-0963.2
NC_008686:1960034:1972763197276319744991737Paracoccus denitrificans PD1222 chromosome 1, complete sequenceRecombinase5e-0963.2
NC_013316:2033906:2085969208596920876391671Clostridium difficile R20291, complete genomehypothetical protein8e-0962.4
NC_012781:2552723:2577962257796225796321671Eubacterium rectale ATCC 33656, complete genomecassette chromosome recombinase B8e-0962.4
NC_012781:700226:7191277191277207971671Eubacterium rectale ATCC 33656, complete genomecassette chromosome recombinase B8e-0962.4
NC_008687:302450:3066933066933083511659Paracoccus denitrificans PD1222 chromosome 2, complete sequenceRecombinase2e-0861.2
NC_015977:3424178:3429807342980734313871581Roseburia hominis A2-183 chromosome, complete genomeRecombinase2e-0860.8
NC_009720:900884:9144479144479164351989Xanthobacter autotrophicus Py2, complete genomerecombinase2e-0860.8
NC_015186:2197236:2286288228628822879221635Acidiphilium multivorum AIU301, complete genomeputative recombinase3e-0860.5
NC_015186:2197236:2265156226515622667961641Acidiphilium multivorum AIU301, complete genomeputative recombinase3e-0860.5
NC_017068:2661419:2688876268887626902761401Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative phage integrase4e-0860.1
NC_012470:1390285:1409368140936814110501683Streptococcus equi subsp. zooepidemicus, complete genomesite-specific recombinase4e-0860.1
NC_009668:445134:4623194623194639741656Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequencerecombinase4e-0860.1
NC_021064:2001786:2012303201230320135531251Propionibacterium avidum 44067, complete genomerecombinase4e-0860.1
NC_012491:3736167:3770304377030437719441641Brevibacillus brevis NBRC 100599, complete genomeputative integrase5e-0859.7
NC_009454:136468:1560681560681575431476Pelotomaculum thermopropionicum SI, complete genomehypothetical protein5e-0859.7
NC_002936:149100:1491001491001506321533Dehalococcoides ethenogenes 195, complete genomeresolvase domain protein6e-0859.3
NC_009445:6621996:6670258667025866718681611Bradyrhizobium sp. ORS 278 chromosome, complete genomerecombinase7e-0859.3
NC_007296:1073784:1081126108112610828051680Streptococcus pyogenes MGAS6180, complete genomesite-specific recombinase8e-0858.9
NC_013739:3006719:3019445301944530209741530Conexibacter woesei DSM 14684, complete genomeResolvase domain protein1e-0758.5
NC_012472:2109719:212586421258642126649786Bacillus cereus 03BB102, complete genomeputative site-specific recombinase, resolvase family1e-0758.5
NC_015977:2874000:2893300289330028949851686Roseburia hominis A2-183 chromosome, complete genomesite-specific recombinase1e-0758.2
NC_015656:2484749:2508886250888625108351950Frankia symbiont of Datisca glomerata chromosome, complete genomeRecombinase2e-0757.8
NC_015152:307500:3232523232523244931242Spirochaeta sp. Buddy chromosome, complete genomeresolvase domain3e-0757.4
NC_011898:2509267:2510829251082925123431515Clostridium cellulolyticum H10, complete genomeRecombinase3e-0757
NC_013316:2033906:2068845206884520705181674Clostridium difficile R20291, complete genomehypothetical protein3e-0757
NC_011837:2605409:2628941262894126305301590Clostridium kluyveri NBRC 12016, complete genomehypothetical protein4e-0757
NC_009706:2673906:2697438269743826990271590Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein4e-0757
NC_017068:1852708:1913987191398719155071521Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative integrase5e-0756.6
NC_009953:691686:6921826921826941521971Salinispora arenicola CNS-205 chromosome, complete genomerecombinase4e-0756.6
NC_013316:2033906:2066666206666620683181653Clostridium difficile R20291, complete genomehypothetical protein6e-0756.2
NC_014638:363577:3836373836373853131677Bifidobacterium bifidum PRL2010 chromosome, complete genomerecombinase family protein9e-0755.5
NC_015697:506494:5307365307365322891554Lactobacillus reuteri SD2112 chromosome, complete genomephage integrase family site-specific recombinase1e-0655.5
NC_015278:176508:1910631910631922891227Aerococcus urinae ACS-120-V-Col10a chromosome, complete genome1e-0655.1
NC_014335:2009662:201810320181032018888786Bacillus cereus biovar anthracis str. CI chromosome, completeDNA integration/recombination/invertion protein1e-0655.1
NC_015278:176508:1927241927241942171494Aerococcus urinae ACS-120-V-Col10a chromosome, complete genomeresolvase, N-terminal domain protein1e-0655.1
NC_016627:2524307:2540263254026325418131551Clostridium clariflavum DSM 19732 chromosome, complete genomesite-specific recombinase, DNA invertase Pin2e-0654.7
NC_009445:467682:470295470295471035741Bradyrhizobium sp. ORS 278 chromosome, complete genome2e-0654.3
NC_010125:1051735:107408210740821074840759Gluconacetobacter diazotrophicus PAl 5, complete genome3e-0653.9
NC_015660:3174424:3178571317857131800281458Geobacillus thermoglucosidasius C56-YS93 chromosome, completeResolvase domain-containing protein3e-0653.9
NC_013170:917177:927289927289928113825Cryptobacterium curtum DSM 15641, complete genomesite-specific recombinase, DNA invertase Pin4e-0653.5
NC_016048:522637:5403145403145418341521Oscillibacter valericigenes Sjm18-20, complete genomeputative recombinase5e-0653.1
NC_017161:502206:5022065022065036181413Hydrogenobacter thermophilus TK-6 chromosome, complete genome7e-0652.8
NC_013799:502126:5021265021265036281503Hydrogenobacter thermophilus TK-6, complete genomeresolvase domain protein7e-0652.8
NC_012472:2109719:211849221184922119277786Bacillus cereus 03BB102, complete genomeputative site-specific recombinase, resolvase family9e-0652.4