Pre_GI: BLASTP Hits

Some Help

Query: NC_003063:1019674:1024454 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1024454, End: 1025776, Length: 1323

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003305:1035342:1048980104898010502901311Agrobacterium tumefaciens str. C58 chromosome linear, completeoxidoreductase0902
NC_014306:4106569:4110719411071941120351317Erwinia billingiae Eb661, complete genomeFAD dependent oxidoreductase1e-74281
NC_015458:2441435:2447150244715024485021353Pusillimonas sp. T7-7 chromosome, complete genomehypothetical protein3e-62239
NC_008254:611437:6268746268746281811308Mesorhizobium sp. BNC1, complete genomeFAD dependent oxidoreductase9e-57221
NC_010184:3213347:3223776322377632250621287Bacillus weihenstephanensis KBAB4, complete genomeFAD dependent oxidoreductase3e-53209
NC_018644:1197897:1212560121256012138461287Alpha proteobacterium HIMB59 chromosome, complete genomeFAD dependent oxidoreductase8e-43174
NC_007963:1370903:1373441137344113747421302Chromohalobacter salexigens DSM 3043, complete genomeFAD dependent oxidoreductase3e-37156
NC_016830:2247789:2252646225264622539291284Pseudomonas fluorescens F113 chromosome, complete genomeFAD dependent oxidoreductase3e-37156
NC_015410:3209954:3228986322898632302691284Pseudomonas mendocina NK-01 chromosome, complete genomeFAD dependent oxidoreductase4e-36152
NC_014306:3210311:3232148323214832334251278Erwinia billingiae Eb661, complete genomegamma-glutamylputrescine oxidoreductase2e-35150
NC_015379:4691868:4709329470932947106121284Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative Gamma-glutamylputrescine oxidoreductase2e-35150
NC_018868:1352000:1373014137301413743121299Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeFAD dependent oxidoreductase6e-35149
NC_009831:1255995:1261914126191412632001287Shewanella sediminis HAW-EB3, complete genomeFAD dependent oxidoreductase2e-33143
NC_020064:1962172:1988844198884419901241281Serratia marcescens FGI94, complete genomeglycine/D-amino acid oxidase, deaminating4e-33142
NC_004129:2609189:2612145261214526134251281Pseudomonas fluorescens Pf-5, complete genomeD-amino acid oxidase family protein5e-33142
NC_009434:2577717:2592176259217625934591284Pseudomonas stutzeri A1501, complete genomeglycine/D-amino acid oxidase7e-33142
NC_007963:1370903:1372060137206013733491290Chromohalobacter salexigens DSM 3043, complete genomeFAD dependent oxidoreductase4e-32139
NC_014618:1809369:1830332183033218316121281Enterobacter cloacae SCF1 chromosome, complete genomeFAD dependent oxidoreductase5e-32139
NC_015731:1578106:1611021161102116123341314Nitrosomonas sp. Is79A3 chromosome, complete genomeFAD dependent oxidoreductase7e-32138
NC_012560:2026483:2028581202858120298641284Azotobacter vinelandii DJ, complete genomeFAD-dependent oxidoreductase4e-31135
NC_021150:2026496:2028594202859420298771284Azotobacter vinelandii CA6, complete genomeFAD-dependent oxidoreductase4e-31135
NC_011001:2327633:2330909233090923321981290Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative gamma-glutamylputrescine oxidoreductase5e-31135
NC_013716:357928:3920993920993933791281Citrobacter rodentium ICC168, complete genomegamma-glutamylputrescine oxidoreductase2e-30134
NC_016114:3275004:3287754328775432891541401Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeFAD dependent oxidoreductase8e-30132
NC_009092:2282437:2317214231721423185451332Shewanella loihica PV-4, complete genomeFAD dependent oxidoreductase6e-30132
NC_010552:2331486:2346923234692323488781956Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceFAD dependent oxidoreductase1e-29130
NC_013524:969038:9844709844709858701401Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genomeFAD dependent oxidoreductase5e-29129
NC_007794:262402:2663312663312676621332Novosphingobium aromaticivorans DSM 12444, complete genomeFAD dependent oxidoreductase3e-28126
NC_010515:2037825:2040487204048720417551269Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceFAD dependent oxidoreductase5e-28125
NC_009049:2131017:2153752215375221550531302Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequenceFAD dependent oxidoreductase5e-28125
NC_011894:3820000:3826585382658538278561272Methylobacterium nodulans ORS 2060, complete genomeFAD dependent oxidoreductase4e-27122
NC_009512:1025365:1029857102985710312631407Pseudomonas putida F1, complete genomeFAD dependent oxidoreductase9e-27121
NC_008027:2648560:2665935266593526673291395Pseudomonas entomophila L48, complete genomeoxidoreductase3e-26120
NC_018750:4333064:4351217435121743526051389Streptomyces venezuelae ATCC 10712, complete genomeGlycine or D-amino acid oxidases3e-26120
NC_016901:2916988:2937170293717029384591290Shewanella baltica OS678 chromosome, complete genomeFAD dependent oxidoreductase4e-26119
NC_009997:2967521:2987703298770329889921290Shewanella baltica OS195, complete genomeFAD dependent oxidoreductase4e-26119
NC_015733:2581324:2600910260091026023011392Pseudomonas putida S16 chromosome, complete genomeaminophosphonate oxidoreductase4e-25116
NC_016625:171341:1988681988682001451278Burkholderia sp. YI23 chromosome 2, complete sequenceFAD dependent oxidoreductase4e-25116
NC_015593:463477:4682984682984697701473Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeFAD dependent oxidoreductase3e-25116
NC_020829:4390417:4417069441706944184451377Pseudomonas denitrificans ATCC 13867, complete genomeD-amino-acid dehydrogenase5e-25115
NC_005126:2756984:2762449276244927640021554Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein5e-23109
NC_007511:1681764:1686305168630516876661362Burkholderia sp. 383 chromosome 2, complete sequenceFAD dependent oxidoreductase3e-22106
NC_012522:2931910:2946241294624129476441404Rhodococcus opacus B4, complete genomeputative oxidoreductase9e-22105
NC_011595:2616861:2618212261821226196571446Acinetobacter baumannii AB307-0294, complete genomegamma-glutamylputrescine oxidoreductase6e-22105
NC_017171:1331794:1336404133640413378791476Acinetobacter baumannii MDR-ZJ06 chromosome, complete genomeglycine/D-amino acid oxidase (deaminating)1e-21104
NC_015379:4426827:4435395443539544366001206Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative oxidoreductase1e-21104
NC_011894:983572:9866949866949880761383Methylobacterium nodulans ORS 2060, complete genomeFAD dependent oxidoreductase7e-21102
NC_004631:3112043:3128854312885431301551302Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative oxidoreductase5e-2099.4
NC_003198:3126548:3143359314335931446601302Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative oxidoreductase5e-2099.4
NC_012962:1317602:1342905134290513444461542Photorhabdus asymbiotica, complete genomefad dependent oxidoreductase4e-2099.4
NC_011770:3396637:3406873340687334082401368Pseudomonas aeruginosa LESB58, complete genomephytoene dehydrogenase1e-1998.2
NC_011149:3187022:3203793320379332050941302Salmonella enterica subsp. enterica serovar Agona str. SL483,tyramine oxidase1e-1997.8
NC_009937:5033152:5054695505469550559901296Azorhizobium caulinodans ORS 571, complete genomeconserved hypothetical protein1e-1997.8
NC_006511:3079512:3096335309633530976361302Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative oxidoreductase1e-1997.8
NC_011147:3075186:3092009309200930933101302Salmonella enterica subsp. enterica serovar Paratyphi A stroxidoreductase2e-1997.4
NC_016832:3100683:3117494311749431187951302Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,FAD dependent oxidoreductase4e-1996.3
NC_016002:2591189:2600136260013626014551320Pseudogulbenkiania sp. NH8B, complete genomeFAD dependent oxidoreductase4e-1892.8
NC_012522:5987644:5987644598764459890681425Rhodococcus opacus B4, complete genomeputative oxidoreductase1e-1791.3
NC_016002:2825017:2832760283276028340821323Pseudogulbenkiania sp. NH8B, complete genomeFAD dependent oxidoreductase3e-1790.1
NC_017223:3345902:3347967334796733494061440Bordetella pertussis CS chromosome, complete genomehypothetical protein4e-1789.4
NC_002929:3305682:3307747330774733091861440Bordetella pertussis Tohama I, complete genomehypothetical protein4e-1789.4
NC_015966:1661329:1685595168559516867851191Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomeFAD dependent oxidoreductase2e-1687
NC_016024:1764516:1803638180363818048461209Candidatus Chloracidobacterium thermophilum B chromosome chromosomeglycine/D-amino acid oxidase4e-1686.3
NC_015733:2581324:2606631260663126078361206Pseudomonas putida S16 chromosome, complete genomeFAD dependent oxidoreductase protein3e-1583.6
NC_005966:2699483:2740002274000227413751374Acinetobacter sp. ADP1, complete genomeputative oxidoreductase4e-1583.2
NC_018644:446102:4680564680564693901335Alpha proteobacterium HIMB59 chromosome, complete genomeFAD dependent oxidoreductase3e-1479.7
NC_015733:2581324:2609343260934326106681326Pseudomonas putida S16 chromosome, complete genomeFAD dependent oxidoreductase2e-1273.6
NC_020209:1986503:1987741198774119890481308Pseudomonas poae RE*1-1-14, complete genomeputative oxidoreductase6e-1272.4
NC_016642:4517478:4521305452130545225701266Pseudovibrio sp. FO-BEG1 chromosome, complete genomeFAD dependent oxidoreductase7e-1272.4
NC_021171:1689518:1704959170495917060681110Bacillus sp. 1NLA3E, complete genomeFAD-dependent glycine oxidase ThiO1e-0757.8
NC_003413:1666520:1669331166933116704671137Pyrococcus furiosus DSM 3638, complete genomesarcosine oxidase, subunit beta9e-0755.5
NC_010674:1124431:1144092114409211455311440Clostridium botulinum B str. Eklund 17B, complete genomeiron-sulfur cluster-binding protein, rieske family2e-0654.3
NC_016625:171341:1816331816331828231191Burkholderia sp. YI23 chromosome 2, complete sequenceFAD dependent oxidoreductase2e-0653.9
NC_012658:1617902:1637465163746516390301566Clostridium botulinum Ba4 str. 657 chromosome, complete genomeFAD-dependent family oxidoreductase2e-0653.9
NC_015410:2698572:2701657270165727031351479Pseudomonas mendocina NK-01 chromosome, complete genomeoxidoreductase8e-0652