Pre_GI: BLASTN Hits

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Query: NC_010498:4899167 Escherichia coli SMS-3-5, complete genome

Start: 4899167, End: 4922745, Length: 23579

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Escherichia coli SMS-3-5 was isolated from a toxic-metal contaminated site, Shipyard Creek, Charleston, South Carolina, USA. This strain is highly resistant to a number of antibiotics. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010468:4252940*4252940428159928660Escherichia coli ATCC 8739, complete genome024960BLASTN svgBLASTP svg
NC_002695:53525545352554537663924086Escherichia coli O157:H7 str. Sakai, complete genome024500BLASTN svgBLASTP svg
NC_002655:53825575382557540664224086Escherichia coli O157:H7 EDL933, complete genome024500BLASTN svgBLASTP svg
NC_015663:2090442*2090442212127330832Enterobacter aerogenes KCTC 2190 chromosome, complete genome010310BLASTN svgBLASTP svg
NC_009801:48826844882684490824525562Escherichia coli E24377A, complete genome01788BLASTN svgBLASTP svg
NC_009800:4529504*4529504454809918596Escherichia coli HS, complete genome01786BLASTN svgBLASTP svg
NC_007613:44030704403070442929526226Shigella boydii Sb227, complete genome01766BLASTN svgBLASTP svg
NC_011750:49780004978000500028022281Escherichia coli IAI39 chromosome, complete genome01762BLASTN svgBLASTP svg
CP002185:47918114791811481779025980Escherichia coli W, complete genome01731BLASTN svgBLASTP svg
CP002516:41991334199133422817229040Escherichia coli KO11, complete genome01731BLASTN svgBLASTP svg
NC_008563:49051864905186492360518420Escherichia coli APEC O1, complete genome01729BLASTN svgBLASTP svg
NC_008253:48178644817864486276044897Escherichia coli 536, complete genome01729BLASTN svgBLASTP svg
NC_007946:48759974875997491969643700Escherichia coli UTI89, complete genome01729BLASTN svgBLASTP svg
NC_004431:51233255123325514909025766Escherichia coli CFT073, complete genome01386BLASTN svgBLASTP svg
NC_010498:49306494930649495591925271Escherichia coli SMS-3-5, complete genome0779BLASTN svgBLASTP svg
AC_000091:45349354534935455904124107Escherichia coli W3110 DNA, complete genome0771BLASTN svgBLASTP svg
NC_000913:45282784528278455238424107Escherichia coli K12, complete genome0771BLASTN svgBLASTP svg
NC_002695:5381576*5381576540611824543Escherichia coli O157:H7 str. Sakai, complete genome0771BLASTN svgBLASTP svg
NC_010473:46303614630361465014819788Escherichia coli str. K-12 substr. DH10B, complete genome0771BLASTN svgBLASTP svg
NC_011751:50705975070597508906918473Escherichia coli UMN026 chromosome, complete genome0771BLASTN svgBLASTP svg
NC_004741:4364235*4364235438964325409Shigella flexneri 2a str. 2457T, complete genome0755BLASTN svgBLASTP svg
NC_004337:4374500*4374500439909924600Shigella flexneri 2a str. 301, complete genome0755BLASTN svgBLASTP svg
CU928160:4570498*4570498461509944602Escherichia coli IAI1 chromosome, complete genome0751BLASTN svgBLASTP svg
NC_008258:4345400*4345400436989824499Shigella flexneri 5 str. 8401, complete genome0747BLASTN svgBLASTP svg
AP010958:52728635272863529459921737Escherichia coli O103:H2 str. 12009 DNA, complete genome0743BLASTN svgBLASTP svg
CP002797:46563274656327468071624390Escherichia coli NA114, complete genome0739BLASTN svgBLASTP svg
NC_013850:4829455*4829455485950430050Klebsiella variicola At-22 chromosome, complete genome2e-41178BLASTN svgBLASTP svg
NC_010102:4745949*4745949476837922431Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,8e-19103BLASTN svgBLASTP svg
NC_015633:28013212801321282546624146Vibrio anguillarum 775 chromosome chromosome I, complete sequence1e-1489.7BLASTN svgBLASTP svg
NC_006905:4638707*4638707467273934033Salmonella enterica subsp. enterica serovar Choleraesuis str1e-1489.7BLASTN svgBLASTP svg
NC_004631:4687270*4687270471022622957Salmonella enterica subsp. enterica serovar Typhi Ty2, complete1e-1489.7BLASTN svgBLASTP svg
NC_011149:46774124677412471244835037Salmonella enterica subsp. enterica serovar Agona str. SL483,5e-1487.7BLASTN svgBLASTP svg
NC_011080:47032664703266472876525500Salmonella enterica subsp. enterica serovar Newport str. SL254,5e-1487.7BLASTN svgBLASTP svg
NC_014121:677799*67779969989822100Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete2e-1385.7BLASTN svgBLASTP svg
CP002185:4750571*4750571477251221942Escherichia coli W, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_014840:76232762329583419603Pantoea sp. At-9b plasmid pPAT9B03, complete sequence2e-1075.8BLASTN svgBLASTP svg
NC_004603:37032037032039589225573Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete7e-1073.8BLASTN svgBLASTP svg