Pre_GI Gene

Some Help

Host: NC_004603 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004603:370320 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
3703203722721953PTS system mannitol-specific IIABC componentQuickGO ontologyBLASTP
372685372801117hypothetical protein
3728833746311749putative hemolysinQuickGO ontologyBLASTP
374809375198390hypothetical protein
375199375918720hypothetical proteinBLASTP
3759623770111050putative lipoproteinQuickGO ontologyBLASTP
377275378027753hypothetical proteinBLASTP
378312379037726putative CFAI fimbrial subunit DQuickGO ontologyBLASTP
379278379553276hypothetical protein
379675380478804putative ABC transporter substrate binding proteinQuickGO ontologyBLASTP
3810543824211368putative integraseQuickGO ontologyBLASTP
382771382872102hypothetical protein
382876383667792hypothetical proteinBLASTP
383963384502540hypothetical proteinBLASTP
385290385577288hypothetical proteinBLASTP
386045386164120hypothetical protein
386475387212738putative inner membrane proteinQuickGO ontologyBLASTP
3874733892241752putative HsdS polypeptide part of CfrA familyQuickGO ontologyBLASTP
3892453907351491type I restriction enzyme M proteinQuickGO ontologyBLASTP
390899391297399hypothetical proteinBLASTP
391336391446111hypothetical protein
391459391608150hypothetical protein
391685392050366hypothetical proteinBLASTP
392432392716285hypothetical proteinBLASTP
392721393386666haemagglutinin associated proteinQuickGO ontologyBLASTP
3934483958922445type I restriction enzyme R proteinQuickGO ontologyBLASTP