Pre_GI: BLASTN Hits

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Query: NC_009664:570768 Kineococcus radiotolerans SRS30216, complete genome

Start: 570768, End: 598431, Length: 27664

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009664:4423829*44238294686013262185Kineococcus radiotolerans SRS30216, complete genome1e-54222BLASTN svgBLASTP svg
NC_013093:1909305*1909305193716827864Actinosynnema mirum DSM 43827, complete genome8e-38167BLASTN svgBLASTP svg
NC_010617:920009200011540023401Kocuria rhizophila DC2201, complete genome7e-26127BLASTN svgBLASTP svg
NC_013093:31578973157897318209324197Actinosynnema mirum DSM 43827, complete genome3e-25125BLASTN svgBLASTP svg
NC_011386:1727203*1727203175090123699Oligotropha carboxidovorans OM5, complete genome6e-20107BLASTN svgBLASTP svg
NC_009937:412302*41230243181319512Azorhizobium caulinodans ORS 571, complete genome6e-20107BLASTN svgBLASTP svg
NC_009937:5033152*5033152505948226331Azorhizobium caulinodans ORS 571, complete genome2e-19105BLASTN svgBLASTP svg
NC_013093:2599591*2599591261994820358Actinosynnema mirum DSM 43827, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_009439:860571*86057188549124921Pseudomonas mendocina ymp, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_015514:33071993307199334464737449Cellulomonas fimi ATCC 484 chromosome, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_008570:3083850*3083850310907525226Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_013858:47729847729850922131924Azospirillum sp. B510 plasmid pAB510d, complete sequence2e-1385.7BLASTN svgBLASTP svg
NC_005773:38514333851433386927817846Pseudomonas syringae pv. phaseolicola 1448A, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_015424:4251369*4251369427627324905Aeromonas veronii B565 chromosome, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_002939:1480474*1480474150560725134Geobacter sulfurreducens PCA, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_004129:57814135781413580497523563Pseudomonas fluorescens Pf-5, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_007005:10362431036243106363927397Pseudomonas syringae pv. syringae B728a, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_009092:43376174337617437380536189Shewanella loihica PV-4, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_012808:39729833972983399542222440Methylobacterium extorquens AM1, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_015410:22588002258800228509926300Pseudomonas mendocina NK-01 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_020209:2119845*2119845214457424730Pseudomonas poae RE*1-1-14, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_011769:2294387*2294387231565121265Desulfovibrio vulgaris str. 'Miyazaki F', complete genome5e-1177.8BLASTN svgBLASTP svg
NC_011770:3735162*3735162376383628675Pseudomonas aeruginosa LESB58, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_012522:78370717837071785964122571Rhodococcus opacus B4, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_014844:1634985*1634985166007225088Desulfovibrio aespoeensis Aspo-2 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_020209:47504*4750412622978726Pseudomonas poae RE*1-1-14, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_006177:10604281060428108247522048Symbiobacterium thermophilum IAM 14863, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_009921:3473854*3473854352959955746Frankia sp. EAN1pec, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_011004:5520771*5520771554678126011Rhodopseudomonas palustris TIE-1, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015410:2505168*2505168253404528878Pseudomonas mendocina NK-01 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_020209:45495634549563457659927037Pseudomonas poae RE*1-1-14, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_013855:558831*55883158109922269Azospirillum sp. B510 plasmid pAB510a, complete sequence9e-1073.8BLASTN svgBLASTP svg
NC_011757:51027325102732513806935338Methylobacterium chloromethanicum CM4, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_008027:29090002909000292988020881Pseudomonas entomophila L48, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_007005:40623114062311408347221162Pseudomonas syringae pv. syringae B728a, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_007778:1053462*1053462107959926138Rhodopseudomonas palustris HaA2, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_009092:15043631504363158010375741Shewanella loihica PV-4, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_011901:13983761398376142787629501Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete3e-0971.9BLASTN svgBLASTP svg
NC_013522:1538994*1538994156384524852Thermanaerovibrio acidaminovorans DSM 6589, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_014844:51155251155253463823087Desulfovibrio aespoeensis Aspo-2 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_014958:26143992614399263935424956Deinococcus maricopensis DSM 21211 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013757:14388121438812147359934788Geodermatophilus obscurus DSM 43160, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_010505:21038872103887213081426928Methylobacterium radiotolerans JCM 2831, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_007511:30808493080849309968718839Burkholderia sp. 383 chromosome 2, complete sequence5e-0867.9BLASTN svgBLASTP svg
NC_008435:39151103915110393809922990Rhodopseudomonas palustris BisA53, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_013174:373726*37372639441720692Jonesia denitrificans DSM 20603, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_015434:65085006508500652647917980Verrucosispora maris AB-18-032 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_019892:7822000*7822000787572053721Singulisphaera acidiphila DSM 18658 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_007626:40380544038054406859930546Magnetospirillum magneticum AMB-1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009092:1047500*1047500107272925230Shewanella loihica PV-4, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009937:43921084392108441736925262Azorhizobium caulinodans ORS 571, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_011757:748223*74822379542247200Methylobacterium chloromethanicum CM4, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014831:22247332224733225059925867Thermaerobacter marianensis DSM 12885 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014844:903877*90387792643122555Desulfovibrio aespoeensis Aspo-2 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_002607:1221158*1221158124535524198Halobacterium sp. NRC-1, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_007643:15047581504758152909924342Rhodospirillum rubrum ATCC 11170, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_009142:67295126729512675813128620Saccharopolyspora erythraea NRRL 2338, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_009439:79449879449881473720240Pseudomonas mendocina ymp, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_009921:56816775681677570432122645Frankia sp. EAN1pec, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_010364:1215489*1215489123640920921Halobacterium salinarum R1, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_012660:5571500*5571500559959928100Pseudomonas fluorescens SBW25 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_006348:2738425*2738425276209923675Burkholderia mallei ATCC 23344 chromosome 1, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_008463:2654014*2654014267605522042Pseudomonas aeruginosa UCBPP-PA14, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008463:3503576*3503576352773524160Pseudomonas aeruginosa UCBPP-PA14, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009664:10718107182939618679Kineococcus radiotolerans SRS30216, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_011146:33768163376816340354026725Geobacter bemidjiensis Bem, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_012808:594000*59400061960225603Methylobacterium extorquens AM1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013946:879199*87919990227423076Meiothermus ruber DSM 1279 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015573:64980064980067054820749Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_016026:21705002170500219248521986Micavibrio aeruginosavorus ARL-13 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_004578:11537381153738117268818951Pseudomonas syringae pv. tomato str. DC3000, complete genome3e-0661.9BLASTN svgBLASTP svg