Pre_GI Gene

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Host: NC_009439 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009439:794498 Pseudomonas mendocina ymp, complete genome

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
7944987962851788thioldisulfide interchange protein precursorQuickGO ontologyBLASTP
7964437984071965methyl-accepting chemotaxis sensory transducerQuickGO ontologyBLASTP
7985177998451329TolC family type I secretion outer membrane proteinQuickGO ontologyBLASTP
7998498011651317HlyD family type I secretion membrane fusion proteinQuickGO ontologyBLASTP
8011758028931719type I secretion system ATPaseQuickGO ontologyBLASTP
8030228083165295hemolysin-type calcium-binding regionQuickGO ontologyBLASTP
8085728111272556hemolysin-type calcium-binding regionQuickGO ontologyBLASTP
8112638128851623response regulator receiver modulated diguanylate cyclaseQuickGO ontologyBLASTP
8131438142011059hypothetical proteinBLASTP
814201814737537NUDIX hydrolaseQuickGO ontologyBLASTP