Pre_GI: BLASTP Hits

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Query: NC_016822:1839739:1848091 Shigella sonnei 53G, complete genome

Start: 1848091, End: 1848417, Length: 327

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010660:86445:9314693146943421197Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequencetransposase1e-1788.6
NC_010658:1772994:1785651178565117868471197Shigella boydii CDC 3083-94, complete genometransposase1e-1788.6
NC_008258:1934479:1935527193552719367231197Shigella flexneri 5 str. 8401, complete genomeISSfl2 ORF1e-1788.6
NC_008253:3941938:3987475398747539886711197Escherichia coli 536, complete genomeputative transposase2e-1787.8
NC_007384:1763375:177004517700451770461417Shigella sonnei Ss046, complete genomeISSfl2 ORF2e-1787.4
NC_007607:87000:1224321224321236281197Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceISSfl2 ORF3e-1787
NC_007434:1322500:1349622134962213509381317Burkholderia pseudomallei 1710b chromosome I, complete sequenceTransposase1e-1685.5
NC_010804:2206000:2216716221671622179211206Burkholderia multivorans ATCC 17616 chromosome 1, completeISBmu10 transposase3e-1684
NC_010087:319063:3418413418413430461206Burkholderia multivorans ATCC 17616 chromosome 3, completetransposase IS116/IS110/IS902 family protein3e-1684
NC_010801:550270:5818125818125830171206Burkholderia multivorans ATCC 17616 chromosome 3, completeISBmu10 transposase3e-1684
NC_010084:1299387:1306852130685213080571206Burkholderia multivorans ATCC 17616 chromosome 1, completetransposase IS116/IS110/IS902 family protein3e-1684
NC_008060:2913671:2927028292702829282901263Burkholderia cenocepacia AU 1054 chromosome 1, complete sequencetransposase IS116/IS110/IS9022e-1684
NC_007952:3196085:3195026319502631962311206Burkholderia xenovorans LB400 chromosome 2, complete sequenceputative transposase2e-1580.9
NC_007951:1928906:194963619496361950214579Burkholderia xenovorans LB400 chromosome 1, complete sequence3e-1580.5
NC_015145:3657103:3677666367766636788651200Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genometransposase3e-1373.9
NC_008537:12500:1657316573178381266Arthrobacter sp. FB24 plasmid 1, complete sequencetransposase, IS111A/IS1328/IS15336e-1269.3
NC_009142:2725000:2743012274301227442291218Saccharopolyspora erythraea NRRL 2338, complete genometransposase IS116/IS110/IS902 family protein3e-1167.4
NC_014391:4617688:4619787461978746210101224Micromonospora aurantiaca ATCC 27029 chromosome, complete genometransposase IS116/IS110/IS902 family protein3e-1167.4
NC_012803:1302261:1311276131127613125021227Micrococcus luteus NCTC 2665, complete genometransposase6e-1166.2
NC_009142:5647737:564935756493575649965609Saccharopolyspora erythraea NRRL 2338, complete genomeputative IS110 transposase/integrase6e-1166.2
NC_008271:119957:1199571199571211321176Rhodococcus sp. RHA1 plasmid pRHL3, complete sequenceprobable transposase7e-1165.9
NC_008543:2696377:270755627075562707891336Burkholderia cenocepacia HI2424 chromosome 2, complete sequencetransposase IS116/IS110/IS902 family protein9e-1165.5
NC_008061:2548849:255909725590972559432336Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencetransposase IS116/IS110/IS9021e-1065.1
NC_016111:1904859:1908978190897819102791302Streptomyces cattleya NRRL 8057, complete genomehypothetical protein6e-1062.8
NC_007384:2251792:226888022688802269701822Shigella sonnei Ss046, complete genomemolybdate metabolism regulator, first fragment2e-0961.2
NC_016822:2341127:235824923582492359070822Shigella sonnei 53G, complete genomehypothetical protein2e-0961.2
NC_007613:4217557:4240173424017342411921020Shigella boydii Sb227, complete genomehypothetical protein8e-0959.3
NC_011750:955451:9522129522129554813270Escherichia coli IAI39 chromosome, complete genome9e-0958.9
NC_007607:87000:103259103259103561303Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequencehypothetical protein1e-0858.2
NC_008258:4345400:4350843435084343522581416Shigella flexneri 5 str. 8401, complete genome2e-0857.8
NC_017328:1835108:184835918483591848667309Shigella flexneri 2002017 chromosome, complete genomehypothetical protein4e-0857
NC_014218:1163513:1178727117872711799261200Arcanobacterium haemolyticum DSM 20595 chromosome, complete genometransposase IS116/IS110/IS902 family protein1e-0652
NC_018583:95388:985769857699028453Gordonia sp. KTR9 plasmid pGKT3, complete sequenceTransposase-like protein1e-0651.6