Pre_GI: BLASTP Hits

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Query: NC_013061:2077603:2079018 Pedobacter heparinus DSM 2366, complete genome

Start: 2079018, End: 2079443, Length: 426

Host Lineage: Pedobacter heparinus; Pedobacter; Sphingobacteriaceae; Sphingobacteriales; Bacteroidetes; Bacteria

General Information: Isolation: Soil; Temp: Mesophile; Temp: 25 - 30C; Habitat: Soil. Formerly Sphingobacterium heparinum this organism was isolated from soil. This organism is able to degrade heparin and heparan sulfate glycosaminoglycans, which are components of extracellular polysaccharides and the cell surface.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010172:1199725:120944312094431209829387Methylobacterium extorquens PA1, complete genomeEndoribonuclease L-PSP3e-1167
NC_011757:1246000:127379612737961274182387Methylobacterium chloromethanicum CM4, complete genomeEndoribonuclease L-PSP6e-1166.2
NC_016935:1365463:139792113979211398301381Paenibacillus mucilaginosus 3016 chromosome, complete genomeendoribonuclease L-PSP3e-1063.5
NC_013385:90331:993919939199813423Ammonifex degensii KC4, complete genomeendoribonuclease L-PSP9e-1062.4
NC_020272:3396800:342115334211533421530378Bacillus amyloliquefaciens IT-45, complete genomehypothetical protein6e-0959.7
NC_017259:388000:391649391649392035387Buchnera aphidicola str. Ua (Uroleucon ambrosiae) chromosome,putative L-PSP (mRNA) endoribonuclease1e-0858.2
NC_008148:2290806:229243722924372292835399Rubrobacter xylanophilus DSM 9941, complete genomeEndoribonuclease L-PSP4e-0857
NC_007948:360199:369335369335369733399Polaromonas sp. JS666, complete genomeEndoribonuclease L-PSP5e-0856.6
NC_014640:2693060:270855427085542708949396Achromobacter xylosoxidans A8 chromosome, complete genomeendoribonuclease L-PSP family protein1e-0755.5
NC_015690:3941113:397856539785653978864300Paenibacillus mucilaginosus KNP414 chromosome, complete genomeendoribonuclease L-PSP1e-0755.1
NC_002528:404545:408889408889409275387Buchnera aphidicola str. APS (Acyrthosiphon pisum), completehypothetical protein2e-0754.7
NC_009614:3714770:372855137285513728928378Bacteroides vulgatus ATCC 8482 chromosome, complete genomeendoribonuclease L-PSP3e-0753.9
NC_018581:759932:766157766157766543387Gordonia sp. KTR9 chromosome, complete genomePutative translation initiation inhibitor, yjgF family4e-0753.5
NC_010473:3354052:335548833554883355877390Escherichia coli str. K-12 substr. DH10B, complete genomepredicted L-PSP (mRNA) endoribonuclease5e-0753.1
NC_010468:613812:630450630450630839390Escherichia coli ATCC 8739, complete genomeendoribonuclease L-PSP5e-0753.1
NC_000913:3256307:325774332577433258132390Escherichia coli K12, complete genomepredicted L-PSP (mRNA) endoribonuclease5e-0753.1
AC_000091:3258377:325837732583773258766390Escherichia coli W3110 DNA, complete genomepredicted L-PSP (mRNA) endoribonuclease5e-0753.1
NC_009800:3307123:330855933085593308948390Escherichia coli HS, complete genomeputative endoribonuclease L-PSP5e-0753.1
NC_010658:3014371:302702430270243027413390Shigella boydii CDC 3083-94, complete genomeputative endoribonuclease L-PSP5e-0753.1
NC_011748:3608917:361329736132973613686390Escherichia coli 55989, complete genomehypothetical protein5e-0753.1
NC_011750:3768692:377307237730723773461390Escherichia coli IAI39 chromosome, complete genomehypothetical protein5e-0753.1
CU928160:3344746:334618233461823346571390Escherichia coli IAI1 chromosome, complete genomeL-PSP (mRNA) endoribonuclease5e-0753.1
NC_004337:3249791:325122732512273251616390Shigella flexneri 2a str. 301, complete genomehypothetical protein5e-0753.1
CP002516:613462:628259628259628648390Escherichia coli KO11, complete genomeendoribonuclease L-PSP5e-0753.1
CP002185:3475991:347742534774253477814390Escherichia coli W, complete genomepredicted L-PSP (mRNA) endoribonuclease5e-0753.1
CU928145:3608917:361329736132973613686390Escherichia coli 55989 chromosome, complete genomeL-PSP (mRNA) endoribonuclease5e-0753.1
NC_010498:3488513:348994934899493490338390Escherichia coli SMS-3-5, complete genomeputative endoribonuclease L-PSP5e-0753.1
NC_002695:3994970:399935039993503999739390Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein5e-0753.1
NC_013941:3884725:388910538891053889557453Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeTdcF protein4e-0753.1
NC_011740:2859933:288112928811292881563435Escherichia fergusonii ATCC 35469, complete genomeputative endoribonuclease5e-0753.1
NC_015277:5211779:523113752311375231598462Sphingobacterium sp. 21 chromosome, complete genomeEndoribonuclease L-PSP5e-0753.1
NC_017328:3289853:329128932912893291741453Shigella flexneri 2002017 chromosome, complete genomehypothetical protein5e-0753.1
NC_007613:2981829:298182929818292982281453Shigella boydii Sb227, complete genomehypothetical protein5e-0753.1
NC_008258:3224721:322615732261573226609453Shigella flexneri 5 str. 8401, complete genomehypothetical protein5e-0753.1
NC_016902:613462:628259628259628648390Escherichia coli KO11FL chromosome, complete genomeendoribonuclease L-PSP5e-0753.1
NC_012967:3191319:319275531927553193144390Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein5e-0753.1
NC_012947:630757:647395647395647784390Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein5e-0753.1
NC_012759:3143455:314489131448913145280390Escherichia coli BW2952 chromosome, complete genomehypothetical protein5e-0753.1
NC_011741:3344746:334618233461823346571390Escherichia coli IAI1 chromosome, complete genomehypothetical protein5e-0753.1
NC_011415:3523364:352774435277443528133390Escherichia coli SE11 chromosome, complete genomehypothetical protein5e-0753.1
NC_004741:3240909:324234532423453242734390Shigella flexneri 2a str. 2457T, complete genomehypothetical protein5e-0753.1
NC_011751:3710786:371516737151673715556390Escherichia coli UMN026 chromosome, complete genomehypothetical protein6e-0752.8
NC_014758:579741:586370586370586747378Calditerrivibrio nitroreducens DSM 19672 chromosome, completeendoribonuclease l-psp1e-0651.6
NC_010516:2093901:209988820998882100256369Clostridium botulinum B1 str. Okra, complete genomeputative endoribonuclease L-PSP1e-0651.6
NC_007907:2306561:231690823169082317294387Desulfitobacterium hafniense Y51, complete genomehypothetical protein3e-0650.8
NC_017079:700524:701704701704702087384Caldilinea aerophila DSM 14535 = NBRC 104270, complete genomehypothetical protein3e-0650.8
NC_010557:1030319:103315510331551033592438Burkholderia ambifaria MC40-6 chromosome 3, complete sequenceEndoribonuclease L-PSP3e-0650.4
NC_010512:1196616:121117012111701211607438Burkholderia cenocepacia MC0-3 chromosome 3, complete sequenceEndoribonuclease L-PSP3e-0650.4
NC_019974:3013338:302391930239193024308390Natronococcus occultus SP4, complete genomeendoribonuclease L-PSP, putative3e-0650.4
NC_011283:1811000:187396318739631874388426Klebsiella pneumoniae 342 chromosome, complete genomeendoribonuclease L-PSP family protein4e-0650.4
NC_007963:2644930:267840626784062678843438Chromohalobacter salexigens DSM 3043, complete genomeEndoribonuclease L-PSP6e-0649.7
NC_009342:841500:851477851477851887411Corynebacterium glutamicum R chromosome, complete genomehypothetical protein6e-0649.7