Pre_GI: BLASTP Hits

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Query: NC_012984:3077004:3089660 Lactobacillus plantarum JDM1, complete genome

Start: 3089660, End: 3090403, Length: 744

Host Lineage: Lactobacillus plantarum; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This strain is a Chinese commercial lactic acid bacterium with several probiotic functions. Lactobacillus plantarum are commonly isolated from plant material, and the gastrointestinal tract of animals. This organism is used in the production of fermented foods such as saurkraut, kimchi and sourdough bread. This organism is also of interest as a probiotic to maintain and regulate the human intestinal microflora.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014328:3823902:383822538382253838944720Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative response regulator receiver domain-containing protein1e-42172
NC_002976:1540794:156046715604671561138672Staphylococcus epidermidis RP62A, complete genomeaccessory gene regulator protein A6e-37154
NC_009785:387910:407897407897408631735Streptococcus gordonii str. Challis substr. CH1, complete genomeResponse regulator of the LytR/AlgR family2e-28125
NC_020207:2240115:225031622503162251068753Enterococcus faecium NRRL B-2354, complete genomeResponse regulator of the LytR, AlgR family6e-25114
NC_014554:337268:366348366348367091744Lactobacillus plantarum subsp. plantarum ST-III chromosome,response regulator PlnD, repressor1e-21103
NC_004567:343500:373896373896374639744Lactobacillus plantarum WCFS1, complete genomeresponse regulator PlnD, repressor1e-21103
NC_004567:343500:373034373034373777744Lactobacillus plantarum WCFS1, complete genomeresponse regulator PlnC, activator2e-1892.8
NC_014554:337268:365486365486366229744Lactobacillus plantarum subsp. plantarum ST-III chromosome,response regulator PlnC, activator2e-1892.8
NC_012004:470492:477357477357478097741Streptococcus uberis 0140J, complete genomeresponse regulator protein4e-1892
NC_013198:2458080:246553224655322466320789Lactobacillus rhamnosus GG, complete genomeresponse regulator, LytR/AlgR family9e-1787
NC_013199:2426686:243414124341412434917777Lactobacillus rhamnosus Lc 705, complete genomeResponse regulator of the LytR/AlgR family1e-1687
NC_010999:2516000:252425525242552525061807Lactobacillus casei, complete genomeResponse regulator4e-1582
NC_008526:2373190:238419923841992385005807Lactobacillus casei ATCC 334, complete genomeResponse regulator of the LytR/AlgR family4e-1582
NC_014334:2307950:231601723160172316823807Lactobacillus casei str. Zhang chromosome, complete genomeresponse regulator of the LytR/AlgR family3e-1582
NC_014393:1022843:104502710450271045773747Clostridium cellulovorans 743B chromosome, complete genometwo component transcriptional regulator, LytTR family2e-1479.3
NC_014152:2849991:286797228679722868697726Thermincola sp. JR, complete genometwo component transcriptional regulator, LytTR family4e-1272
NC_016048:308342:328892328892329599708Oscillibacter valericigenes Sjm18-20, complete genomeputative two-component response regulator6e-1271.2
NC_015589:3852217:386341738634173864118702Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeresponse regulator receiver8e-1270.9
NC_014624:287500:304428304428305174747Eubacterium limosum KIST612 chromosome, complete genomeResponse regulator of the LytR/AlgR family5e-1168.2
NC_012778:207415:217309217309218022714Eubacterium eligens ATCC 27750, complete genometwo-component system, LytT family, response regulator1e-1067
NC_011898:3159411:319241031924103193168759Clostridium cellulolyticum H10, complete genometwo component transcriptional regulator, LytTR family1e-0963.5
NC_014376:2921769:293831329383132939053741Clostridium saccharolyticum WM1 chromosome, complete genometwo component transcriptional regulator, LytTR family1e-0963.5
NC_016627:1485799:149181114918111492536726Clostridium clariflavum DSM 19732 chromosome, complete genomeresponse regulator of the LytR/AlgR family2e-0962.8
NC_015172:850802:866232866232866960729Syntrophobotulus glycolicus DSM 8271 chromosome, complete genometwo component transcriptional regulator, LytTR family2e-0962.4
NC_015589:2281054:228878522887852289513729Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeLytTr DNA-binding protein3e-0962.4
NC_013174:501326:500595500595501329735Jonesia denitrificans DSM 20603, complete genometwo component transcriptional regulator, LytTR family4e-0962
NC_016048:375676:399488399488400183696Oscillibacter valericigenes Sjm18-20, complete genomeputative two-component response regulator1e-0860.1
NC_007907:2249607:225088322508832251608726Desulfitobacterium hafniense Y51, complete genomehypothetical protein2e-0859.7
NC_015690:8614000:862677486267748627514741Paenibacillus mucilaginosus KNP414 chromosome, complete genometwo-component response regulator4e-0858.5
NC_018704:2417902:242905824290582429768711Amphibacillus xylanus NBRC 15112, complete genomeputative two-component system response regulator8e-0857.8
NC_017295:1809386:181342318134231814184762Clostridium acetobutylicum EA 2018 chromosome, complete genomeResponse regulator (CheY-like receiver domain and DNA-binding HTH domain)9e-0857.4
NC_003030:1811820:181401018140101814771762Clostridium acetobutylicum ATCC 824, complete genomeResponse regulator (CheY-like receiver domain and DNA-binding HTH domain)9e-0857.4
NC_015687:1811573:181561018156101816371762Clostridium acetobutylicum DSM 1731 chromosome, complete genomeresponse regulator9e-0857.4
NC_016894:77853:840308403084764735Acetobacterium woodii DSM 1030 chromosome, complete genometwo component transcriptional regulator2e-0756.6
NC_009699:3581376:361409836140983614862765Clostridium botulinum F str. Langeland chromosome, complete genomeLytTr family DNA-binding response regulator6e-0754.7
NC_017297:3594000:361271236127123613476765Clostridium botulinum F str. 230613 chromosome, complete genomeDNA-binding response regulator, LytTr family6e-0754.7
NC_008261:576923:593925593925594641717Clostridium perfringens ATCC 13124, complete genomeDNA-binding response regulator8e-0754.3
NC_010520:3580000:359767035976703598434765Clostridium botulinum A3 str. Loch Maree, complete genomeDNA-binding response regulator, LytTr family8e-0754.3
NC_011750:919953:938353938353939072720Escherichia coli IAI39 chromosome, complete genomeputative two-component response-regulatory protein YehT9e-0753.9
NC_012563:3729817:376253737625373763301765Clostridium botulinum A2 str. Kyoto, complete genomeDNA-binding response regulator, LytTr family1e-0653.9
NC_003228:3752035:375130137513013752038738Bacteroides fragilis NCTC 9343, complete genomeputative two-component system, response regulator2e-0653.1
NC_009495:3502000:352046735204673521231765Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeDNA-binding response regulator, LytTr family2e-0653.1
NC_009697:3463736:349645534964553497219765Clostridium botulinum A str. ATCC 19397 chromosome, completeLytTr family DNA-binding response regulator2e-0653.1
NC_006347:3843228:384459438445943845331738Bacteroides fragilis YCH46, complete genometwo-component system response regulator2e-0653.1
NC_016776:3798108:379737437973743798111738Bacteroides fragilis 638R, complete genomeputative two-component system, response regulator2e-0653.1
NC_006513:1379735:140444814044481405074627Azoarcus sp. EbN1, complete genometwo-component response regulator2e-0653.1
NC_009616:99647:116610116610117290681Thermosipho melanesiensis BI429 chromosome, complete genomeLytTR family two component transcriptional regulator2e-0652.8
NC_014376:1842290:186064418606441861369726Clostridium saccharolyticum WM1 chromosome, complete genometwo component transcriptional regulator, LytTR family2e-0652.8
NC_015275:3407358:342575034257503426475726Clostridium lentocellum DSM 5427 chromosome, complete genometwo component transcriptional regulator, LytTR family4e-0652
NC_009617:648000:666775666775667533759Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeLytTR family two component transcriptional regulator4e-0651.6
NC_012778:841934:882083882083882793711Eubacterium eligens ATCC 27750, complete genomehypothetical protein7e-0651.2
NC_014933:3715467:371826637182663718967702Bacteroides helcogenes P 36-108 chromosome, complete genometwo component transcriptional regulator, LytTR family7e-0651.2
NC_009089:1283000:128229312822931283006714Clostridium difficile 630, complete genometwo-component response regulator8e-0650.8
NC_013316:2033906:207459320745932075183591Clostridium difficile R20291, complete genomehypothetical protein9e-0650.8