Pre_GI: BLASTP Hits

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Query: NC_012848:320883:333587 Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501,

Start: 333587, End: 335143, Length: 1557

Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host, Root nodule. This biovar is a symbiont of clover plants and is important commercially as it is used in the agricultural industry. Strain WSM1325 is compatible with many perennial clovers of Mediterranean origin used in farming, such as T. pratense, and is therefore one of the most important clover inoculants but is incompatible with American and African perennial clovers, such as those nodulated by the dissimilar strain WSM2304. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007958:4371125:4373401437340143746001200Rhodopseudomonas palustris BisB5, complete genometransposase, IS204/IS1001/IS1096/IS11653e-121435
NC_008435:1131242:113624811362481137051804Rhodopseudomonas palustris BisA53, complete genomehypothetical protein2e-98359
NC_020126:8512908:8528792852879285305131722Myxococcus stipitatus DSM 14675, complete genometransposase2e-59230
NC_003155:299873:3053113053113069451635Streptomyces avermitilis MA-4680, complete genomeIS6 family transposase2e-57223
NC_011892:352652:3526523526523542891638Methylobacterium nodulans ORS 2060 plasmid pMNOD01, completetransposase IS204/IS1001/IS1096/IS1165 family protein1e-56221
NC_016587:523215:5301665301665315421377Azospirillum lipoferum 4B plasmid AZO_p4, complete sequencetransposase of ISAli11, ISL3 family4e-55216
NC_020050:296702:3090373090373107011665Cylindrospermum stagnale PCC 7417 plasmid pCYLST.01, partialtransposase family protein1e-51204
NC_010498:2278306:2292586229258622942051620Escherichia coli SMS-3-5, complete genomeISL3 family transposase1e-51204
NC_012988:4387735:4400950440095044025991650Methylobacterium extorquens DM4, complete genometransposase of ISMex10, ISL3 family1e-49197
NC_011894:3161289:3201131320113132025941464Methylobacterium nodulans ORS 2060, complete genometransposase IS204/IS1001/IS1096/IS1165 family protein1e-46188
NC_018750:6132619:6162249616224961636371389Streptomyces venezuelae ATCC 10712, complete genomeputative IS6 family transposase4e-45182
NC_008278:514600:5305715305715319801410Frankia alni ACN14a, complete genomePutative transposase2e-44180
NC_011757:5102732:5109841510984151109261086Methylobacterium chloromethanicum CM4, complete genometransposase IS204/IS1001/IS1096/IS1165 family protein1e-43177
NC_018681:5551000:5577490557749055790791590Nocardia brasiliensis ATCC 700358 chromosome, complete genometransposase IS204/IS1001/IS1096/IS1165 family protein1e-43177
NC_003888:3817000:3827457382745738289621506Streptomyces coelicolor A3(2), complete genometransposase5e-43176
NC_021177:118710:1321001321001336321533Streptomyces fulvissimus DSM 40593, complete genomePutative IS transposase2e-42174
NC_007958:4371125:437460043746004374956357Rhodopseudomonas palustris BisB5, complete genomeputative transposase3e-42173
NC_011894:6295807:6308799630879963104871689Methylobacterium nodulans ORS 2060, complete genometransposase IS204/IS1001/IS1096/IS1165 family protein1e-41171
NC_003888:3817000:3829043382904338305841542Streptomyces coelicolor A3(2), complete genometransposase6e-40165
NC_003903:260796:2793232793232808641542Streptomyces coelicolor A3(2) plasmid SCP1, complete sequenceinsertion element is466s transposase6e-40165
NC_009380:4702815:4705943470594347074781536Salinispora tropica CNB-440 chromosome, complete genometransposase, IS204/IS1001/IS1096/IS1165 family protein5e-39162
NC_015065:162317:1623171623171636511335Acidobacterium sp. MP5ACTX9 plasmid pACIX902, complete sequencetransposase IS204/IS1001/IS1096/IS1165 family protein4e-38159
NC_009921:4035225:4041045404104540421061062Frankia sp. EAN1pec, complete genometransposase IS204/IS1001/IS1096/IS1165 family protein2e-32140
NC_010511:7400255:7408414740841474094481035Methylobacterium sp. 4-46 chromosome, complete genometransposase IS204/IS1001/IS1096/IS1165 family protein2e-31137
NC_009921:4757148:4767093476709347683251233Frankia sp. EAN1pec, complete genome3e-31136
NC_013929:1611940:1638611163861116401431533Streptomyces scabiei 87.22 chromosome, complete genomeIS transposase1e-26121
NC_007958:4371125:437628943762894376663375Rhodopseudomonas palustris BisB5, complete genomehypothetical protein1e-23111
NC_009012:3591687:3591687359168735931171431Clostridium thermocellum ATCC 27405, complete genometransposase, IS204/IS1001/IS1096/IS11654e-21103
NC_004431:1166568:117083311708331171582750Escherichia coli CFT073, complete genomePutative Transposase3e-20100
NC_010498:1094000:109451310945131095496984Escherichia coli SMS-3-5, complete genomeISL3 family transposase3e-1997.1
NC_013353:2455052:246921624692162470199984Escherichia coli O103:H2 str. 12009, complete genome3e-1996.7
AP010958:2455052:246921624692162470199984Escherichia coli O103:H2 str. 12009 DNA, complete genome3e-1996.7
CP002797:2062006:207964120796412080498858Escherichia coli NA114, complete genomeputative transposase7e-1995.9
NC_009953:4748147:476166347616634762556894Salinispora arenicola CNS-205 chromosome, complete genometransposase IS204/IS1001/IS1096/IS1165 family protein5e-1893.2
NC_015186:2165628:217503921750392175413375Acidiphilium multivorum AIU301, complete genomehypothetical protein1e-1792
NC_016582:11734963:1174598711745987117470871101Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative transposase for insertion sequence element4e-1790.1
NC_015757:1329012:135308313530831353832750Sulfobacillus acidophilus TPY chromosome, complete genometransposase1e-1688.2
NC_008253:296500:300321300321300704384Escherichia coli 536, complete genomeputative transposase2e-1481.3
NC_019673:2051363:207896720789672079578612Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein3e-1480.1
NC_007964:4157500:417138041713804172108729Nitrobacter hamburgensis X14, complete genome5e-1479.7
NC_019673:2051363:207774920777492078381633Saccharothrix espanaensis DSM 44229 complete genomeTransposase5e-1479.7
NC_011748:4792703:479435747943574795040684Escherichia coli 55989, complete genomeconserved hypothetical protein, putative transposase (fragment)2e-1377.8
CU928145:4792703:479435747943574795040684Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein, putative transposase (fragment)2e-1377.8
NC_010725:3961981:396945239694523970012561Methylobacterium populi BJ001, complete genometransposase, IS204/IS1001/IS1096/IS1165 family protein2e-1171.2
NC_009921:4757148:476679447667944767045252Frankia sp. EAN1pec, complete genomeputative transposase2e-1170.9
NC_019970:439969:4423644423644436531290Thermoanaerobacterium thermosaccharolyticum M0795, complete genometransposase family protein1e-1068.2
NC_016846:24500:306163061631119504Klebsiella pneumoniae subsp. pneumoniae HS11286 plasmid pKPHS2,putative transposase3e-1067
NC_004431:1166568:117035811703581170861504Escherichia coli CFT073, complete genomehypothetical protein9e-1065.5
NC_017328:3088907:310558731055873106093507Shigella flexneri 2002017 chromosome, complete genomeputative transposase3e-0963.5
NC_004337:3049118:306579930657993066305507Shigella flexneri 2a str. 301, complete genomehypothetical protein3e-0963.5
NC_019673:2051363:207837820783782078854477Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein9e-0962.4
NC_004431:324000:333750333750334046297Escherichia coli CFT073, complete genomehypothetical protein1e-0861.6
NC_016582:10326938:103479231034792310348282360Streptomyces bingchenggensis BCW-1 chromosome, complete genometransposase IS204/IS1001/IS1096/IS1165 family protein2e-0860.8
NC_009012:3591687:359319835931983593467270Clostridium thermocellum ATCC 27405, complete genometransposase3e-0860.5
NC_011757:1067543:107070810707081070974267Methylobacterium chloromethanicum CM4, complete genome3e-0860.5
NC_012034:1925983:192866619286661929196531Anaerocellum thermophilum DSM 6725, complete genometransposase, IS204/IS1001/IS1096/IS1165 family protein7e-0859.3
NC_009428:725871:750038750038750205168Rhodobacter sphaeroides ATCC 17025 chromosome, complete genomehypothetical protein2e-0757.8
NC_009921:8549757:857466585746658575126462Frankia sp. EAN1pec, complete genomeTransposase and inactivated derivatives-like protein2e-0757.4
NC_009921:5531972:554084155408415541683843Frankia sp. EAN1pec, complete genomehypothetical protein3e-0757
NC_004431:2304280:233639823363982336559162Escherichia coli CFT073, complete genomehypothetical protein3e-0757
NC_003155:622993:625518625518626249732Streptomyces avermitilis MA-4680, complete genometransposase4e-0756.6
NC_011083:4547825:459203745920374592579543Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,5e-0756.6
NC_014550:889500:9123769123769136531278Arthrobacter arilaitensis Re117, complete genometransposase of ISAar13, ISL3 family6e-0756.2
NC_014550:3263783:3280298328029832815751278Arthrobacter arilaitensis Re117, complete genometransposase of ISAar13, ISL3 family6e-0756.2
NC_014550:1581812:1596324159632415976011278Arthrobacter arilaitensis Re117, complete genometransposase of ISAar13, ISL3 family6e-0756.2
NC_014550:1581812:1623124162312416244011278Arthrobacter arilaitensis Re117, complete genometransposase of ISAar13, ISL3 family6e-0756.2
NC_004431:324000:334492334492334875384Escherichia coli CFT073, complete genomehypothetical protein1e-0655.5
NC_014718:440960:444831444831445265435Burkholderia rhizoxinica HKI 454 chromosome, complete genomeTransposase2e-0654.7
NC_010805:575709:605789605789606373585Burkholderia multivorans ATCC 17616 chromosome 2, completeISBmu25 truncated transposase2e-0654.3
NC_020210:901240:9256989256989268881191Geobacillus sp. GHH01, complete genometransposase4e-0653.5
NC_009674:840000:854903854903855310408Bacillus cytotoxicus NVH 391-98 chromosome, complete genometransposase, IS204/IS1001/IS1096/IS11655e-0653.1
NC_003155:590500:595471595471596031561Streptomyces avermitilis MA-4680, complete genomeIS3L-like transposase7e-0652.8