Pre_GI: BLASTP Hits

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Query: NC_012808:4137000:4138025 Methylobacterium extorquens AM1, complete genome

Start: 4138025, End: 4138288, Length: 264

Host Lineage: Methylobacterium extorquens; Methylobacterium; Methylobacteriaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: First isolated in 1960 in Oxford, England, as an airborne contaminant growing on methylamine. This strain can grow on methylamine or methanol, but not methane. This organism is capable of growth on one-carbon compounds such as methanol. Methanol is oxidized to formaldehyde which is then used metabolically to generate either energy or biomass. These bacteria are commonly found in the environment, especially associated with plants which produce methanol when metabolizing pectin during cell wall synthesis. At least 25 genes are required for this complex process of converting methanol to formaldehyde and this specialized metabolic pathway is of great interest.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015590:145353:152549152549152821273Sinorhizobium meliloti AK83 chromosome 1, complete sequencehelix-turn-helix domain-containing protein5e-28122
NC_003047:536151:546632546632546901270Sinorhizobium meliloti 1021, complete genomeHYPOTHETICAL TRANSCRIPTION REGULATOR PROTEIN6e-28122
NC_017249:18493:345743457434855282Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein6e-1579.7
NC_004463:18497:345793457934860282Bradyrhizobium japonicum USDA 110, complete genomeprobable transcriptional regulator6e-1579.7
NC_009667:1371924:137862013786201378910291Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequenceXRE family transcriptional regulator2e-1477.4
NC_012808:58701:745447454474837294Methylobacterium extorquens AM1, complete genomeTranscriptional regulator, XRE family2e-1374.7
NC_014311:1507945:151246115124611512742282Ralstonia solanacearum PSI07 chromosome, complete genomeHTH-type transcriptional regulator4e-1166.6
NC_017075:4880807:488612248861224886376255Rubrivivax gelatinosus IL144, complete genometranscriptional regulator, Xre family1e-1065.5
NC_020134:1328302:133670913367091337281573Clostridium stercorarium subsp. stercorarium DSM 8532, completeputative cytosolic protein5e-1063.2
NC_011365:1103927:110644811064481106699252Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeXRE family transcriptional regulator9e-1062.4
NC_010120:1065833:107078010707801071133354Neisseria meningitidis 053442, complete genometranscriptional regulator1e-0961.6
NC_012912:1053618:106326310632631063553291Dickeya zeae Ech1591, complete genometranscriptional regulator, XRE family2e-0961.6
NC_011667:1:118811881436249Thauera sp. MZ1T plasmid pTha01, complete sequencehelix-turn-helix domain protein2e-0960.8
NC_013421:478586:490944490944491180237Pectobacterium wasabiae WPP163, complete genometranscriptional regulator, XRE family3e-0960.8
NC_010125:381711:395573395573395824252Gluconacetobacter diazotrophicus PAl 5, complete genomeputative transcriptional regulatory protein3e-0960.5
NC_007651:3560652:357327135732713573513243Burkholderia thailandensis E264 chromosome I, complete sequenceDNA-binding protein3e-0960.5
NC_016641:1530905:154211415421141542458345Paenibacillus terrae HPL-003 chromosome, complete genometranscriptional regulator sinR3e-0960.5
NC_016641:2894899:291399229139922914339348Paenibacillus terrae HPL-003 chromosome, complete genometranscriptional regulator4e-0960.1
NC_009659:1050532:111355311135531113789237Janthinobacterium sp. Marseille chromosome, complete genomesubunit S of type I restriction-modification system4e-0960.1
NC_012668:2258854:228069922806992280908210Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein5e-0959.7
NC_012668:1623350:164392816439281644137210Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein5e-0959.7
NC_012668:160357:168333168333168542210Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein5e-0959.7
NC_008740:220642:235926235926236135210Marinobacter aquaeolei VT8, complete genome8e-0959.3
NC_006350:845513:873400873400873708309Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative DNA-binding protein1e-0858.5
NC_008322:373531:373304373304373534231Shewanella sp. MR-7, complete genometranscriptional regulator, XRE family1e-0858.2
NC_014618:1103239:112464711246471124898252Enterobacter cloacae SCF1 chromosome, complete genomehelix-turn-helix domain-containing protein2e-0858.2
NC_007509:3668:235972359723938342Burkholderia sp. 383 chromosome 3, complete sequencetranscriptional regulator, XRE family2e-0857.8
NC_014217:2987450:299692129969212997139219Starkeya novella DSM 506 chromosome, complete genometranscriptional regulator, XRE family2e-0857.8
NC_009901:2272206:229964522996452299851207Shewanella pealeana ATCC 700345, complete genometranscriptional regulator, XRE family2e-0857.8
NC_009901:4216206:422500142250014225207207Shewanella pealeana ATCC 700345, complete genometranscriptional regulator, XRE family2e-0857.8
NC_009455:273519:308492308492308707216Dehalococcoides sp. BAV1 chromosome, complete genomeXRE family transcriptional regulator3e-0857.4
NC_013890:103807:108816108816109031216Dehalococcoides sp. GT chromosome, complete genometranscriptional regulator, XRE family3e-0857.4
NC_002695:5352554:535634053563405356804465Escherichia coli O157:H7 str. Sakai, complete genomeputative transcription regulator3e-0857
NC_002655:5382557:538634353863435386807465Escherichia coli O157:H7 EDL933, complete genomehypothetical protein3e-0857
NC_011353:5426793:542998854299885430452465Escherichia coli O157:H7 str. EC4115 chromosome, complete genometranscriptional regulator3e-0857
NC_013008:5382917:538604953860495386513465Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein3e-0857
NC_014483:1146682:114946911494691149816348Paenibacillus polymyxa E681 chromosome, complete genomePutative HTH-type transcriptional regulator3e-0857
NC_010725:4035397:407959340795934079832240Methylobacterium populi BJ001, complete genometranscriptional regulator, XRE family4e-0856.6
NC_020260:440000:450272450272450733462Cronobacter sakazakii Sp291, complete genomeXRE family transcriptional regulator5e-0856.6
NC_014622:5683400:568439956843995684743345Paenibacillus polymyxa SC2 chromosome, complete genometranscriptional regulator5e-0856.6
NC_015633:2565753:258423625842362584445210Vibrio anguillarum 775 chromosome chromosome I, complete sequencehypothetical protein6e-0856.2
NC_007508:2941889:295324729532472953522276Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomehypothetical protein9e-0855.8
NC_008358:2638245:269643226964322696641210Hyphomonas neptunium ATCC 15444, complete genomeDNA-binding protein9e-0855.8
NC_010622:249625:297861297861298133273Burkholderia phymatum STM815 chromosome 1, complete sequencetranscriptional regulator, XRE family9e-0855.8
NC_002936:1395432:140162414016241401842219Dehalococcoides ethenogenes 195, complete genomeDNA-binding protein8e-0855.8
NC_014311:3076519:311203031120303112257228Ralstonia solanacearum PSI07 chromosome, complete genomehypothetical protein7e-0855.8
NC_016002:1975000:200038420003842000629246Pseudogulbenkiania sp. NH8B, complete genomeputative transcriptional regulator1e-0755.5
NC_009439:1297851:133053813305381330783246Pseudomonas mendocina ymp, complete genomeXRE family transcriptional regulator1e-0755.5
NC_013739:717352:726063726063726323261Conexibacter woesei DSM 14684, complete genometranscriptional regulator, XRE family1e-0755.5
NC_015422:3184823:320448032044803204743264Alicycliphilus denitrificans K601 chromosome, complete genomehelix-turn-helix domain-containing protein1e-0755.5
NC_014622:5683400:568480656848065685150345Paenibacillus polymyxa SC2 chromosome, complete genometranscription factor,eukaryotic mbf11e-0755.1
NC_010338:4108280:413608541360854136321237Caulobacter sp. K31, complete genometranscriptional regulator, XRE family1e-0755.1
NC_007946:289425:303574303574304038465Escherichia coli UTI89, complete genomeputative transcription regulator1e-0755.1
NC_010334:609636:626708626708626914207Shewanella halifaxensis HAW-EB4, complete genometranscriptional regulator, XRE family2e-0754.7
NC_016830:3869572:389216638921663892420255Pseudomonas fluorescens F113 chromosome, complete genometranscriptional xre family2e-0754.3
NC_013739:717352:741950741950742222273Conexibacter woesei DSM 14684, complete genometranscriptional regulator, XRE family2e-0754.3
NC_020409:1173796:118106611810661181392327Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeTranscriptional regulator, XRE family2e-0754.3
NC_007912:909112:922165922165922410246Saccharophagus degradans 2-40, complete genomeRibulose-phosphate 3-epimerase3e-0753.9
NC_014815:841484:892056892056892697642Micromonospora sp. L5 chromosome, complete genomehelix-turn-helix domain protein3e-0753.9
NC_009656:44500:901009010090321222Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein4e-0753.5
NC_015376:3320818:335258433525843353144561Burkholderia gladioli BSR3 chromosome chromosome 2, completetranscriptional regulator, XRE family4e-0753.5
NC_018868:619113:654559654559654795237Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeCro/CI family transcriptional regulator4e-0753.5
NC_013446:1648556:169582916958291696128300Comamonas testosteroni CNB-2, complete genometranscriptional regulator, XRE family4e-0753.5
NC_010506:4873487:488892448889244889130207Shewanella woodyi ATCC 51908, complete genometranscriptional regulator, XRE family4e-0753.5
NC_009659:2849000:286908228690822869411330Janthinobacterium sp. Marseille chromosome, complete genomehypothetical protein4e-0753.5
NC_012660:2045398:210077121007712101025255Pseudomonas fluorescens SBW25 chromosome, complete genomeputative HTH-type regulatory protein4e-0753.5
NC_015675:6423000:642730664273066427524219Mesorhizobium opportunistum WSM2075 chromosome, complete genomeXRE family transcriptional regulator4e-0753.5
NC_014923:5868000:587263558726355872853219Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completehelix-turn-helix domain protein4e-0753.5
NC_019973:5797000:580159558015955801813219Mesorhizobium australicum WSM2073, complete genomeputative transcriptional regulator4e-0753.5
NC_004347:4007847:401423640142364014463228Shewanella oneidensis MR-1, complete genometranscriptional regulator, Cro/CI family6e-0753.1
NC_015186:2908387:292159829215982921819222Acidiphilium multivorum AIU301, complete genomeXre family transcriptional regulator5e-0753.1
NC_009434:695582:749946749946750173228Pseudomonas stutzeri A1501, complete genomeCro/CI family transcriptional regulator5e-0753.1
NC_010338:2136193:214120421412042141413210Caulobacter sp. K31, complete genometranscriptional regulator, XRE family7e-0752.8
NC_010338:4481356:448954444895444489780237Caulobacter sp. K31, complete genometranscriptional regulator, XRE family7e-0752.8
NC_014391:621062:642875642875643516642Micromonospora aurantiaca ATCC 27029 chromosome, complete genomehelix-turn-helix domain-containing protein7e-0752.8
NC_014500:3097362:313932931393293139574246Dickeya dadantii 3937 chromosome, complete genomehypothetical protein7e-0752.8
NC_014118:1083492:108753610875361087850315Burkholderia sp. CCGE1002 chromosome chromosome 2, completetranscriptional regulator, XRE family7e-0752.8
NC_010512:1015557:102764110276411027886246Burkholderia cenocepacia MC0-3 chromosome 3, complete sequencetranscriptional regulator, XRE family7e-0752.8
NC_009617:4805413:480886648088664809417552Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeXRE family transcriptional regulator7e-0752.8
NC_012917:4646491:465446146544614654796336Pectobacterium carotovorum subsp. carotovorum PC1, complete genometranscriptional regulator, XRE family7e-0752.8
NC_007510:1959883:200793820079382008219282Burkholderia sp. 383 chromosome 1, complete sequencetranscriptional regulator, XRE family6e-0752.8
NC_007512:771975:803620803620803925306Pelodictyon luteolum DSM 273, complete genometranscriptional regulator, XRE family6e-0752.8
NC_005085:1096000:110426611042661104529264Chromobacterium violaceum ATCC 12472, complete genomeprobable transcriptional regulator9e-0752.4
NC_009953:2808288:281348928134892814016528Salinispora arenicola CNS-205 chromosome, complete genomeXRE family transcriptional regulator9e-0752.4
NC_011662:2402408:240955324095532409810258Thauera sp. MZ1T, complete genometranscriptional regulator, XRE family9e-0752.4
NC_012912:1701231:171734517173451717590246Dickeya zeae Ech1591, complete genometranscriptional regulator, XRE family8e-0752.4
NC_010338:2136193:214150521415052141729225Caulobacter sp. K31, complete genometranscriptional regulator, XRE family8e-0752.4
NC_011662:1017933:102195810219581022257300Thauera sp. MZ1T, complete genometranscriptional regulator, XRE family8e-0752.4
NC_014844:511552:515402515402515728327Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomehelix-turn-helix domain-containing protein8e-0752.4
NC_014618:1103239:112495011249501125180231Enterobacter cloacae SCF1 chromosome, complete genomehelix-turn-helix domain-containing protein1e-0652
NC_002678:4618555:464247446424744642701228Mesorhizobium loti MAFF303099, complete genometranscriptional regulatory protein1e-0652
CP002207:3520874:352970035297003529933234Bacillus atrophaeus 1942, complete genometranscriptional regulator, XRE family protein1e-0652
NC_014639:3520874:352970035297003529933234Bacillus atrophaeus 1942 chromosome, complete genomeXRE family transcriptional regulator1e-0652
NC_014483:4740214:474950147495014749890390Paenibacillus polymyxa E681 chromosome, complete genomePredicted transcriptional regulator2e-0651.6
NC_010943:1332243:135334013533401353636297Stenotrophomonas maltophilia K279a, complete genomeputative HTH transcriptional regulator2e-0651.6
NC_013421:3752619:375856837585683759032465Pectobacterium wasabiae WPP163, complete genometranscriptional regulator, XRE family1e-0651.6
NC_014624:1369642:137228713722871372838552Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein1e-0651.6
NC_013132:782846:785123785123785347225Chitinophaga pinensis DSM 2588, complete genometranscriptional regulator, XRE family1e-0651.6
NC_020829:940692:947744947744947956213Pseudomonas denitrificans ATCC 13867, complete genomehypothetical protein1e-0651.6
NC_015572:1:100251002510264240Methylomonas methanica MC09 chromosome, complete genomehelix-turn-helix domain-containing protein2e-0651.2
NC_011146:3720658:374169537416953742027333Geobacter bemidjiensis Bem, complete genometranscriptional regulator, XRE family2e-0651.2
NC_016641:872394:881627881627881998372Paenibacillus terrae HPL-003 chromosome, complete genometranscriptional regulator2e-0651.2
NC_015138:693865:707847707847708416570Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completehelix-turn-helix domain-containing protein2e-0651.2
NC_008825:2564965:257084225708422571141300Methylibium petroleiphilum PM1, complete genomehypothetical protein2e-0651.2
NC_009997:5188221:521110652111065211312207Shewanella baltica OS195, complete genometranscriptional regulator, XRE family2e-0651.2
NC_009665:5072413:509397950939795094185207Shewanella baltica OS185 chromosome, complete genomeXRE family transcriptional regulator2e-0651.2
NC_016901:5130147:515172851517285151934207Shewanella baltica OS678 chromosome, complete genomehelix-turn-helix domain-containing protein2e-0651.2
NC_009706:2023912:205709120570912057333243Clostridium kluyveri DSM 555 chromosome, complete genometranscriptional regulator3e-0650.8
NC_010501:3987615:399792639979263998156231Pseudomonas putida W619, complete genometranscriptional regulator, XRE family3e-0650.8
NC_012034:2555447:257888725788872579120234Anaerocellum thermophilum DSM 6725, complete genometranscriptional regulator, XRE family3e-0650.8
NC_004557:1553000:155369415536941554401708Clostridium tetani E88, complete genomeputative transcriptional regulatory protein3e-0650.8
NC_008321:3815940:382182538218253822061237Shewanella sp. MR-4, complete genometranscriptional regulator, XRE family2e-0650.8
NC_014306:4376012:437939943793994379686288Erwinia billingiae Eb661, complete genomeXRE family transcriptional regulator2e-0650.8
NC_009511:1746631:175245517524551752628174Sphingomonas wittichii RW1 chromosome, complete genomeXRE family transcriptional regulator4e-0650.4
NC_009720:4406991:444623344462334446451219Xanthobacter autotrophicus Py2, complete genomeXRE family transcriptional regulator3e-0650.4
NC_011985:3869998:388257438825743882792219Agrobacterium radiobacter K84 chromosome 1, complete genomehypothetical protein3e-0650.4
NC_016616:2997348:300945030094503009686237Dechlorosoma suillum PS chromosome, complete genomeputative transcriptional regulator3e-0650.4
NC_011837:1969144:198859419885941988845252Clostridium kluyveri NBRC 12016, complete genomehypothetical protein3e-0650.4
NC_007512:771975:779175779175779816642Pelodictyon luteolum DSM 273, complete genometranscriptional regulator, XRE family3e-0650.4
NC_007644:1638083:166268516626851663587903Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, XRE family5e-0650.1
NC_013282:551219:574665574665574976312Cronobacter turicensis, complete genomehypothetical protein5e-0650.1
NC_008061:2582000:259167425916742591919246Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencetranscriptional regulator, XRE family5e-0650.1
NC_008543:2666846:267507026750702675315246Burkholderia cenocepacia HI2424 chromosome 2, complete sequencetranscriptional regulator, XRE family5e-0650.1
NC_015572:4916430:492508549250854925324240Methylomonas methanica MC09 chromosome, complete genomehelix-turn-helix domain-containing protein5e-0650.1
NC_011283:1178500:118395211839521184521570Klebsiella pneumoniae 342 chromosome, complete genomeDNA-binding protein4e-0650.1
NC_014834:872924:891844891844892065222Rhodopseudomonas palustris DX-1 chromosome, complete genomehelix-turn-helix domain-containing protein4e-0650.1
NC_020541:4122852:413357841335784133802225Rhodanobacter sp. 2APBS1, complete genomeputative transcriptional regulator4e-0650.1
NC_013739:5535945:555957955595795559845267Conexibacter woesei DSM 14684, complete genometranscriptional regulator, XRE family4e-0650.1
NC_014500:894136:905690905690905920231Dickeya dadantii 3937 chromosome, complete genomeMunI regulatory protein4e-0650.1
NC_016818:3736213:375836837583683758922555Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeputative transcriptional regulator4e-0650.1
NC_009667:1934818:194392819439281944158231Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequenceXRE family transcriptional regulator5e-0649.7
NC_014006:3124818:313237831323783132620243Sphingobium japonicum UT26S chromosome 1, complete genomeXre-family transcriptional regulator7e-0649.3
NC_008826:170609:177087177087177320234Methylibium petroleiphilum PM1 plasmid RPME01, complete sequencesubunit S of type I restriction-modification system8e-0649.3