Pre_GI Gene

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Host: NC_012668 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012668:2258854 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
225885422602301377para-aminobenzoate synthase aminase componentQuickGO ontologyBLASTP
22604272261041615hypothetical proteinBLASTP
226134022625931254serine transporterQuickGO ontologyBLASTP
226268622640471362L-serine dehydrataseQuickGO ontologyBLASTP
22641362264414279queuosine biosynthesis QueD PTPS-IQuickGO ontologyBLASTP
226462822662531626hypothetical proteinBLASTP
226625322680971845hypothetical proteinBLASTP
226809422701212028hypothetical proteinBLASTP
22701392270633495hypothetical proteinBLASTP
227127422725811308hypothetical proteinBLASTP
22728402273736897hypothetical proteinBLASTP
227395822777403783type I site-specific deoxyribonuclease HsdR familyQuickGO ontologyBLASTP
227774422790181275hypothetical proteinBLASTP
227900222805941593type I restriction-modification system DNA-methyltransferase subunit MQuickGO ontologyBLASTP
22806992280908210hypothetical proteinBLASTP
22810152281554540hypothetical proteinBLASTP
228154422828631320HipA proteinQuickGO ontologyBLASTP
22832842283640357hypothetical proteinBLASTP
22839072284047141hypothetical proteinBLASTP
228462822862591632methyl-accepting chemotaxis proteinQuickGO ontologyBLASTP
228640622878061401asparaginyl-tRNA synthetaseQuickGO ontologyBLASTP
22878722288720849phosphomethylpyrimidine kinaseQuickGO ontologyBLASTP
228922922907071479response regulatorQuickGO ontologyBLASTP
22906792290864186hypothetical protein
229106722922661200aromatic amino acid aminotransferaseQuickGO ontologyBLASTP
229254722944601914hypothetical proteinBLASTP
22944572295167711DNA polymerase III subunit epsilonQuickGO ontologyBLASTP