Pre_GI: BLASTP Hits

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Query: NC_010001:69000:90930 Clostridium phytofermentans ISDg, complete genome

Start: 90930, End: 91751, Length: 822

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012891:1277966:129143912914391292212774Streptococcus dysgalactiae subsp. equisimilis GGS_124 chromosome 1,hypothetical protein2e-1686.3
NC_014479:509919:530075530075530860786Bacillus subtilis subsp. spizizenii str. W23 chromosome, completehelix-turn-helix domain-containing protein2e-1686.3
NC_009328:293000:362637362637363419783Geobacillus thermodenitrificans NG80-2 chromosome, complete genomehypothetical protein5e-1685.1
NC_013721:533048:557357557357558343987Gardnerella vaginalis 409-05, complete genomeDNA-binding protein3e-1479.3
NC_015589:2878000:287984128798412880455615Desulfotomaculum ruminis DSM 2154 chromosome, complete genomehelix-turn-helix domain-containing protein6e-1478.2
NC_010520:725312:730360730360730752393Clostridium botulinum A3 str. Loch Maree, complete genomeDNA-binding protein2e-1376.3
NC_015977:2966971:298258929825892983200612Roseburia hominis A2-183 chromosome, complete genomehypothetical protein3e-1375.9
NC_015977:3011177:302804130280413028793753Roseburia hominis A2-183 chromosome, complete genomehypothetical protein5e-1375.1
NC_011830:3081726:309011130901113091079969Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, XRE family2e-1273.2
NC_007907:1996194:200522520052252006193969Desulfitobacterium hafniense Y51, complete genomehypothetical protein2e-1272.8
NC_015732:982774:9996799996791000284606Spirochaeta caldaria DSM 7334 chromosome, complete genomehelix-turn-helix domain-containing protein9e-1270.9
NC_017217:1092916:1094552109455210955591008Bifidobacterium animalis subsp. lactis V9 chromosome, completeXre-type transcriptional regulator5e-1168.2
NC_017216:1092751:1094387109438710953941008Bifidobacterium animalis subsp. lactis BLC1, complete genometranscriptional regulator5e-1168.2
NC_011835:1819707:1821343182134318223501008Bifidobacterium animalis subsp. lactis AD011 chromosome, completetranscriptional regulator5e-1168.2
NC_012815:1092795:1094431109443110954381008Bifidobacterium animalis subsp. lactis DSM 10140, complete genomeXre-type transcriptional regulator5e-1168.2
NC_012814:1092860:1094496109449610955031008Bifidobacterium animalis subsp. lactis Bl-04, complete genomeXre-type transcriptional regulator5e-1168.2
NC_017215:1091941:1094155109415510952011047Bifidobacterium animalis subsp. lactis CNCM I-2494 chromosome,transcriptional regulator7e-1168.2
NC_017214:1727676:1729273172927317303191047Bifidobacterium animalis subsp. lactis BB-12 chromosome, completetranscriptional regulator7e-1168.2
NC_016048:1930089:194775419477541948359606Oscillibacter valericigenes Sjm18-20, complete genomeputative Xre family DNA-binding protein2e-1066.6
NC_018720:417500:4175284175284185561029Bifidobacterium asteroides PRL2011 chromosome, complete genometranscriptional regulator2e-0963.5
NC_004193:2921103:293865229386522939191540Oceanobacillus iheyensis HTE831, complete genomehypothetical protein2e-0963.2
NC_018720:1336839:134774913477491348339591Bifidobacterium asteroides PRL2011 chromosome, complete genomeDNA-binding protein5e-0961.6
NC_012778:403962:424154424154424807654Eubacterium eligens ATCC 27750, complete genomehypothetical protein6e-0961.6
NC_011772:1011220:101541510154151015864450Bacillus cereus G9842, complete genomehypothetical protein6e-0961.6
NC_021184:3497000:350753735075373508112576Desulfotomaculum gibsoniae DSM 7213, complete genomeputative transcription factor, MBF1 like protein6e-0961.2
NC_004722:1008500:101368010136801014129450Bacillus cereus ATCC 14579, complete genomeTranscriptional repressor8e-0961.2
NC_017208:1050414:105646110564611056910450Bacillus thuringiensis serovar chinensis CT-43 chromosome, completetranscriptional repressor8e-0961.2
NC_011725:1032500:103773410377341038183450Bacillus cereus B4264 chromosome, complete genomehypothetical protein8e-0961.2
NC_010816:1274702:1286137128613712872251089Bifidobacterium longum DJO10A, complete genomeXre-type transcriptional regulator1e-0860.8
NC_013165:1780321:179707517970751797665591Slackia heliotrinireducens DSM 20476, complete genomepredicted transcriptional regulator1e-0860.5
NC_009012:1857845:1863582186358218647061125Clostridium thermocellum ATCC 27405, complete genometranscriptional regulator, XRE family1e-0860.1
NC_010184:1017000:102191410219141022363450Bacillus weihenstephanensis KBAB4, complete genometranscriptional regulator, XRE family2e-0860.1
NC_012659:1008028:101323810132381013687450Bacillus anthracis str. A0248, complete genomehypothetical protein2e-0860.1
NC_007530:1007140:101333810133381013787450Bacillus anthracis str. 'Ames Ancestor', complete genomedna-binding protein2e-0860.1
NC_016779:991298:994401994401994850450Bacillus cereus F837/76 chromosome, complete genomeXRE family transcriptional regulator2e-0860.1
NC_014915:3320768:335612833561283356535408Geobacillus sp. Y412MC52 chromosome, complete genomehelix-turn-helix domain protein2e-0859.7
NC_013411:3314799:335015933501593350566408Geobacillus sp. Y412MC61, complete genometranscriptional regulator, XRE family2e-0859.7
NC_015738:629297:632870632870633292423Eggerthella sp. YY7918, complete genomehypothetical protein2e-0859.7
NC_014206:3355156:337460433746043375011408Geobacillus sp. C56-T3 chromosome, complete genomeXRE family transcriptional regulator2e-0859.7
NC_011773:1050000:105554110555411055990450Bacillus cereus AH820 chromosome, complete genomehypothetical protein2e-0859.7
NC_003923:2794686:281261228126122813181570Staphylococcus aureus subsp. aureus MW2, complete genomehypothetical protein2e-0859.7
NC_002953:2773000:279195227919522792521570Staphylococcus aureus subsp. aureus MSSA476, complete genomehypothetical protein2e-0859.7
NC_015738:220000:232818232818233381564Eggerthella sp. YY7918, complete genomehypothetical protein2e-0859.7
NC_007907:4956500:496382249638224964049228Desulfitobacterium hafniense Y51, complete genomehypothetical protein3e-0859.3
NC_020210:3246839:326198032619803262387408Geobacillus sp. GHH01, complete genometranscriptional regulator3e-0859.3
NC_019897:73957:123516123516123968453Thermobacillus composti KWC4 chromosome, complete genometranscriptional regulator3e-0859.3
NC_003997:1007139:101333710133371013558222Bacillus anthracis str. Ames, complete genomeDNA-binding protein4e-0858.9
NC_005945:1008000:101323210132321013510279Bacillus anthracis str. Sterne, complete genomeDNA-binding protein4e-0858.9
NC_011830:1037520:105910110591011059934834Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, XRE family4e-0858.9
NC_016048:351205:358476358476358985510Oscillibacter valericigenes Sjm18-20, complete genomeputative Xre family DNA-binding protein5e-0858.5
NC_014624:828943:829811829811830257447Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein8e-0857.8
NC_005957:1037205:104193210419321042381450Bacillus thuringiensis serovar konkukian str. 97-27, completepossible transcriptional regulator; possible DNA-binding protein9e-0857.8
NC_010001:109893:129389129389129880492Clostridium phytofermentans ISDg, complete genometranscriptional regulator, XRE family9e-0857.4
NC_015975:441580:462657462657463235579Lactobacillus ruminis ATCC 27782 chromosome, complete genomeputative phage repressor1e-0757
NC_016627:1960097:196316219631621963602441Clostridium clariflavum DSM 19732 chromosome, complete genomelooped-hinge helix DNA binding domain, AbrB family3e-0755.8
NC_015690:7422911:743071274307127430906195Paenibacillus mucilaginosus KNP414 chromosome, complete genomeXRE family transcriptional regulator3e-0755.8
NC_016935:7512884:752068375206837520877195Paenibacillus mucilaginosus 3016 chromosome, complete genomeXRE family transcriptional regulator3e-0755.8
NC_008497:79144:963919639196705315Lactobacillus brevis ATCC 367, complete genomeTranscriptional regulator, xre family4e-0755.5
NC_020995:1205524:122679012267901227404615Enterococcus casseliflavus EC20, complete genomehypothetical protein4e-0755.5
NC_015500:2112975:211297521129752113562588Treponema brennaborense DSM 12168 chromosome, complete genomehelix-turn-helix domain protein6e-0755.1
NC_015420:35384:219421942349156Lactobacillus buchneri NRRL B-30929 plasmid pLBUC01, complete8e-0754.7
NC_013798:1744118:175405317540531754478426Streptococcus gallolyticus UCN34, complete genomeputative transcriptional regulator8e-0754.3
NC_013895:117429:164188164188164820633Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completeDNA-binding protein1e-0653.9
NC_015759:726612:730036730036730575540Weissella koreensis KACC 15510 chromosome, complete genomeXRE family transcriptional regulator1e-0653.9
NC_015428:193817:204686204686204910225Lactobacillus buchneri NRRL B-30929 chromosome, complete genomehelix-turn-helix domain-containing protein2e-0653.5
NC_003212:57061:785057850578981477Listeria innocua Clip11262, complete genomehypothetical protein2e-0653.5
NC_006322:1415863:142614914261491426517369Bacillus licheniformis ATCC 14580, complete genomeYqaE1e-0653.5
NC_006270:1415001:142528614252861425654369Bacillus licheniformis ATCC 14580, complete genomeprobable transcriptional regulator (phage-related)1e-0653.5
NC_014334:2696000:271134127113412711898558Lactobacillus casei str. Zhang chromosome, complete genomeXRE family transcriptional regulator2e-0653.1
NC_013205:526281:535213535213535704492Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,transcriptional regulator, XRE family2e-0653.1
NC_015385:2050648:207824820782482078703456Treponema succinifaciens DSM 2489 chromosome, complete genomehelix-turn-helix domain protein3e-0652.8
NC_016048:751000:769269769269769643375Oscillibacter valericigenes Sjm18-20, complete genomeputative Xre family DNA-binding protein2e-0652.8
NC_015573:2463123:248662424866242486842219Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehelix-turn-helix domain-containing protein3e-0652.4
NC_014831:8965:177711777118166396Thermaerobacter marianensis DSM 12885 chromosome, complete genomehelix-turn-helix domain protein3e-0652.4
NC_000964:2049899:205548820554882055826339Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein3e-0652.4
NC_015573:2040500:204189420418942042295402Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehelix-turn-helix domain-containing protein4e-0652
NC_015428:1483768:150354015035401503917378Lactobacillus buchneri NRRL B-30929 chromosome, complete genomehelix-turn-helix domain-containing protein4e-0652
NC_013385:90331:106210106210106566357Ammonifex degensii KC4, complete genometranscriptional regulator, XRE family5e-0651.6
NC_014551:576000:577723577723578103381Bacillus amyloliquefaciens DSM 7, complete genomehypothetical protein7e-0651.2
NC_009089:1093832:109383210938321094164333Clostridium difficile 630, complete genomeputative phage regulatory protein8e-0651.2
NC_010001:649000:650678650678651022345Clostridium phytofermentans ISDg, complete genometranscriptional regulator, XRE family9e-0650.8