Pre_GI Gene

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Host: NC_015975 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_015975:441580 Lactobacillus ruminis ATCC 27782 chromosome, complete genome

Host Lineage: Lactobacillus ruminis; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This organism was isolated from bovine rumen. They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
4415804427071128nuclease SbcCD D subunitQuickGO ontologyBLASTP
4427044458083105Exonuclease SbcCD subunit CQuickGO ontologyBLASTP
445837446427591hypothetical proteinBLASTP
446518446976459ferric uptake regulation proteinQuickGO ontologyBLASTP
4472794485351257Tyrosyl-tRNA synthetaseQuickGO ontologyBLASTP
45068045075273tRNA-AlaQuickGO ontologyBLASTP
4539064540221175S ribosomal RNAQuickGO ontologyBLASTP
4550944595484455glutamate synthase large subunitQuickGO ontologyBLASTP
4595664609991434glutamate synthase small subunitQuickGO ontologyBLASTP
461345461800456putative RNA polymerase sigma factorQuickGO ontologyBLASTP
462385462567183hypothetical protein
462657463235579putative phage repressorQuickGO ontologyBLASTP
463948464121174hypothetical proteinBLASTP
46431046438273tRNA-ThrQuickGO ontology
4644374667162280ATP-dependent DNA helicaseQuickGO ontologyBLASTP