Pre_GI: BLASTP Hits

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Query: NC_010001:4168817:4172661 Clostridium phytofermentans ISDg, complete genome

Start: 4172661, End: 4174016, Length: 1356

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014720:154111:1562391562391575611323Caldicellulosiruptor kronotskyensis 2002 chromosome, completeextracellular solute-binding protein family 11e-99363
NC_015690:7785875:7785875778587577872091335Paenibacillus mucilaginosus KNP414 chromosome, complete genomefamily 1 extracellular solute-binding protein7e-39162
NC_014364:1263427:1278910127891012802081299Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeextracellular solute-binding protein family 14e-35149
NC_013526:835117:8442878442878457741488Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeextracellular solute-binding protein family 15e-34145
NC_009328:1867971:1885183188518318865051323Geobacillus thermodenitrificans NG80-2 chromosome, complete genomesugar ABC transporter sugar-binding protein3e-33142
NC_013411:2739989:2761338276133827626631326Geobacillus sp. Y412MC61, complete genomeextracellular solute-binding protein family 15e-31135
NC_019970:929666:9492049492049505231320Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeABC-type sugar transport system, periplasmic component4e-30132
NC_016641:373623:3751463751463764831338Paenibacillus terrae HPL-003 chromosome, complete genomefamily 1 extracellular solute-binding protein5e-29129
NC_013093:2633000:2663250266325026645241275Actinosynnema mirum DSM 43827, complete genomeextracellular solute-binding protein family 15e-27122
NC_014169:1909482:1922288192228819235621275Bifidobacterium longum subsp. longum JDM301 chromosome, completefamily 1 extracellular solute-binding protein1e-26121
NC_011898:1218500:1239924123992412412791356Clostridium cellulolyticum H10, complete genomeextracellular solute-binding protein family 15e-26119
NC_016582:8711199:8715519871551987168381320Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative extracellular solute-binding protein8e-26118
NC_013929:9450747:9464895946489594661961302Streptomyces scabiei 87.22 chromosome, complete genomesugar-binding lipoprotein1e-23111
NC_012032:448161:4605724605724619181347Chloroflexus sp. Y-400-fl, complete genomeextracellular solute-binding protein family 12e-23110
NC_010175:448020:4604304604304617761347Chloroflexus aurantiacus J-10-fl, complete genomeextracellular solute-binding protein family 12e-23110
NC_011898:1218500:1236408123640812377751368Clostridium cellulolyticum H10, complete genomeextracellular solute-binding protein family 14e-23109
NC_020134:1783000:1783007178300717843291323Clostridium stercorarium subsp. stercorarium DSM 8532, completeextracellular solute-binding protein, family 12e-22107
NC_009328:3322802:3358034335803433593201287Geobacillus thermodenitrificans NG80-2 chromosome, complete genomesugar ABC transporter sugar-binding protein5e-22106
NC_008010:321561:3322443322443335061263Deinococcus geothermalis DSM 11300 plasmid 1, complete sequenceextracellular solute-binding protein, family 19e-22105
NC_019970:336472:4140204140204153301311Thermoanaerobacterium thermosaccharolyticum M0795, complete genomecarbohydrate ABC transporter substrate-binding protein, CUT1 family3e-21103
NC_014829:3964616:3989370398937039907071338Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeextracellular solute-binding protein family 13e-20100
NC_015690:7334786:7334786733478673361141329Paenibacillus mucilaginosus KNP414 chromosome, complete genomefamily 1 extracellular solute-binding protein3e-2099.8
NC_007435:1446916:1485572148557214868131242Burkholderia pseudomallei 1710b chromosome II, complete sequenceABC transporter, substrate-binding protein2e-1894
NC_009078:2718741:2757397275739727585961200Burkholderia pseudomallei 1106a chromosome II, complete sequenceABC transporter, carbohydrate uptake transporter-1 (CUT1) family, periplasmic carbohydrate-binding protein2e-1894
NC_015514:3307199:3319443331944333207561314Cellulomonas fimi ATCC 484 chromosome, complete genomefamily 1 extracellular solute-binding protein2e-1894
NC_014364:815346:8153468153468166261281Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeextracellular solute-binding protein family 13e-1789.7
NC_013172:3093467:3101736310173631030161281Brachybacterium faecium DSM 4810, complete genomeABC-type sugar transport system, periplasmic component5e-1789.4
NC_015588:1847500:1861534186153418627991266Isoptericola variabilis 225 chromosome, complete genomeextracellular solute-binding protein family 19e-1788.6
NC_015732:30472:6462464624659641341Spirochaeta caldaria DSM 7334 chromosome, complete genomeextracellular solute-binding protein family 11e-1687.8
NC_014828:1905479:1919665191966519209691305Ethanoligenens harbinense YUAN-3 chromosome, complete genomeextracellular solute-binding protein family 13e-1686.7
NC_020134:2832857:2834796283479628359981203Clostridium stercorarium subsp. stercorarium DSM 8532, completeextracellular solute-binding protein, family 12e-1584.3
NC_008261:1249595:1270941127094112722001260Clostridium perfringens ATCC 13124, complete genomesugar ABC transporter, sugar-binding protein6e-1582.4
NC_014483:4891100:4892084489208448933491266Paenibacillus polymyxa E681 chromosome, complete genomeABC-type sugar transport system, periplasmic component8e-1582
NC_013526:105195:1229431229431243491407Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeextracellular solute-binding protein family 11e-1481.6
NC_003366:461602:4790084790084802761269Clostridium perfringens str. 13, complete genomehypothetical protein6e-1479
NC_014622:5251000:5251227525122752524921266Paenibacillus polymyxa SC2 chromosome, complete genomemultiple sugar-binding transporter multiple sugar-binding protein8e-1479
NC_014618:586240:5922685922685935151248Enterobacter cloacae SCF1 chromosome, complete genomeextracellular solute-binding protein2e-1377.4
NC_013714:2477638:2490253249025324915241272Bifidobacterium dentium Bd1, complete genomeSolute binding protein of ABC transporter system3e-1377
NC_014364:1899983:1918380191838019196721293Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeextracellular solute-binding protein family 13e-1377
NC_016641:1984206:1986876198687619881261251Paenibacillus terrae HPL-003 chromosome, complete genomesugar ABC transporter periplasmic protein3e-1377
NC_012914:4238142:4261099426109942624451347Paenibacillus sp. JDR-2, complete genomeextracellular solute-binding protein family 13e-1376.6
NC_010001:2836995:2843299284329928446211323Clostridium phytofermentans ISDg, complete genomeextracellular solute-binding protein family 14e-1376.6
NC_011898:3772899:3791754379175437930851332Clostridium cellulolyticum H10, complete genomeextracellular solute-binding protein family 18e-1375.5
NC_014169:2407266:2413659241365924149871329Bifidobacterium longum subsp. longum JDM301 chromosome, completefamily 1 extracellular solute-binding protein1e-1275.1
NC_014656:1704101:1716280171628017176081329Bifidobacterium longum subsp. longum BBMN68 chromosome, completemale-type abc sugar transport system periplasmic component1e-1275.1
NC_015737:1931541:1933294193329419346311338Clostridium sp. SY8519, complete genomesugar-binding periplasmic protein/domains1e-1275.1
NC_010816:1735937:1741494174149417428221329Bifidobacterium longum DJO10A, complete genomeMalE-type ABC sugar transport system periplasmic component1e-1274.7
NC_014483:562594:5665565665565678511296Paenibacillus polymyxa E681 chromosome, complete genomeABC-type sugar transport system, periplasmic component2e-1274.3
NC_008043:499399:5144205144205156731254Silicibacter sp. TM1040 mega plasmid, complete sequenceextracellular solute-binding protein, family 12e-1274.3
NC_008699:56500:6667666676679951320Nocardioides sp. JS614, complete genomeextracellular solute-binding protein, family 12e-1274.3
NC_017138:2293576:2294922229492222961811260Bacillus megaterium WSH-002 chromosome, complete genomesugar ABC superfamily ATP binding cassette transporter, binding protein2e-1273.9
NC_016641:2225779:2229650222965022310351386Paenibacillus terrae HPL-003 chromosome, complete genomesugar ABC transporter periplasmic protein2e-1273.9
NC_016109:2938000:2945031294503129464221392Kitasatospora setae KM-6054, complete genomechitobiose ABC transporter substrate-binding protein4e-1273.2
NC_009443:142500:1541291541291555561428Streptococcus suis 98HAH33, complete genomesugar ABC transporter periplasmic protein5e-1272.8
NC_014622:653599:6574276574276587221296Paenibacillus polymyxa SC2 chromosome, complete genomemultiple sugar-binding transporter multiple sugar-binding protein7e-1272
NC_015577:1462874:1490454149045414918031350Treponema azotonutricium ZAS-9 chromosome, complete genomeputative bacterial extracellular solute-binding protein8e-1272
NC_012926:140000:1543541543541556281275Streptococcus suis BM407 chromosome, complete genomeextracellular solute-binding lipoprotein8e-1272
NC_012924:142500:1543751543751556491275Streptococcus suis SC84, complete genomeextracellular solute-binding lipoprotein8e-1272
NC_012925:140000:1545701545701558441275Streptococcus suis P1/7, complete genomeextracellular solute-binding lipoprotein8e-1272
NC_017079:700524:7125027125027138841383Caldilinea aerophila DSM 14535 = NBRC 104270, complete genomeputative ABC transporter substrate binding protein2e-1170.9
NC_000854:1:2250622506239121407Aeropyrum pernix K1, complete genomeABC transporter, substrate binding protein2e-1170.5
NC_014652:2323598:2330356233035623315821227Caldicellulosiruptor hydrothermalis 108 chromosome, completeextracellular solute-binding protein family 13e-1170.1
NC_019896:1989997:1999551199955120007561206Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeSugar ABC transporter substrate-binding protein3e-1170.1
NC_009437:475817:4947954947954960211227Caldicellulosiruptor saccharolyticus DSM 8903, complete genomeextracellular solute-binding protein4e-1170.1
NC_016935:2567039:2601872260187226032001329Paenibacillus mucilaginosus 3016 chromosome, complete genomeextracellular solute-binding protein7e-1168.9
NC_014364:2562281:2583685258368525849861302Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeextracellular solute-binding protein family 11e-1068.2
NC_011899:1021672:1024430102443010257041275Halothermothrix orenii H 168, complete genomeextracellular solute-binding protein family 12e-1067.4
NC_015275:309133:3242063242063255641359Clostridium lentocellum DSM 5427 chromosome, complete genomeextracellular solute-binding protein family 12e-1067.4
NC_016114:7252500:7259946725994672612531308Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeABC transporter substrate-binding protein3e-1067
NC_013411:2767400:2781619278161927829831365Geobacillus sp. Y412MC61, complete genomeextracellular solute-binding protein family 14e-1066.6
NC_014915:1909275:1921556192155619229171362Geobacillus sp. Y412MC52 chromosome, complete genomeextracellular solute-binding protein family 14e-1066.6
NC_016628:537137:5466405466405479141275Vibrio furnissii NCTC 11218 chromosome 2, complete sequencesugar transport system sugar-binding lipoprotein5e-1066.2
NC_012491:6143928:6148872614887261501701299Brevibacillus brevis NBRC 100599, complete genomeprobable ABC transporter substrate binding protein5e-1066.2
NC_014720:2420455:2437885243788524391111227Caldicellulosiruptor kronotskyensis 2002 chromosome, completeextracellular solute-binding protein family 16e-1065.9
NC_014392:412916:4339374339374351631227Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomeextracellular solute-binding protein family 11e-0965.1
NC_015152:272500:2726852726852739591275Spirochaeta sp. Buddy chromosome, complete genomeextracellular solute-binding protein family 12e-0964.3
NC_012034:438000:4587584587584599841227Anaerocellum thermophilum DSM 6725, complete genomeextracellular solute-binding protein family 12e-0963.9
NC_015949:2101302:2106691210669121079171227Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomefamily 1 extracellular solute-binding protein3e-0963.5
NC_014721:373607:3913783913783926041227Caldicellulosiruptor kristjanssonii 177R1B chromosome, completeextracellular solute-binding protein family 13e-0963.5
NC_013656:2317224:2320566232056623218101245Lactococcus lactis subsp. lactis KF147, complete genomesugar ABC transporter sugar-binding protein3e-0963.5
NC_015690:2039215:2052584205258420539121329Paenibacillus mucilaginosus KNP414 chromosome, complete genomeextracellular solute-binding protein3e-0963.5
NC_014364:3500041:3506794350679435080321239Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeextracellular solute-binding protein family 14e-0963.2
NC_018720:47984:7697776977782301254Bifidobacterium asteroides PRL2011 chromosome, complete genomeABC transporter, extracellular substrate binding protein, probably xylobiose porter5e-0962.8
NC_014644:1532500:1554471155447115556941224Gardnerella vaginalis ATCC 14019 chromosome, complete genomeABC transporter binding protein7e-0962.4
NC_010816:1735937:1735937173593717372261290Bifidobacterium longum DJO10A, complete genomeMalE-type ABC sugar transport system periplasmic component1e-0862
NC_015677:3179910:3192885319288531940661182Ramlibacter tataouinensis TTB310 chromosome, complete genomesugar ABC transporter periplasmic protein1e-0861.6
NC_014656:1704101:1710723171072317120121290Bifidobacterium longum subsp. longum BBMN68 chromosome, completemale-type abc sugar transport system periplasmic component1e-0861.6
NC_014169:2407266:2419255241925524205441290Bifidobacterium longum subsp. longum JDM301 chromosome, completefamily 1 extracellular solute-binding protein1e-0861.6
NC_013406:3926531:3941852394185239432551404Paenibacillus sp. Y412MC10 chromosome, complete genomefamily 1 extracellular solute-binding protein1e-0861.6
NC_010572:2843589:2863797286379728650441248Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative ABC transporter substrate-binding protein2e-0861.2
NC_017218:31247:4968249682510551374Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genomeABC transporter substrate-binding protein1e-0861.2
NC_016582:7946000:7952288795228879535861299Streptomyces bingchenggensis BCW-1 chromosome, complete genomeMalE-type ABC sugar transport system periplasmic component2e-0860.8
NC_015671:874500:8980898980898994231335Cellvibrio gilvus ATCC 13127 chromosome, complete genomefamily 1 extracellular solute-binding protein2e-0860.8
NC_013517:773280:7751637751637764041242Sebaldella termitidis ATCC 33386, complete genomeextracellular solute-binding protein family 12e-0860.5
NC_013406:303218:3367583367583380501293Paenibacillus sp. Y412MC10 chromosome, complete genomefamily 1 extracellular solute-binding protein3e-0860.5
NC_015732:773143:8067808067808080661287Spirochaeta caldaria DSM 7334 chromosome, complete genomeextracellular solute-binding protein family 15e-0859.3
NC_017221:2268276:2284399228439922855711173Bifidobacterium longum subsp. longum KACC 91563 chromosome,ABC transporter substrate-binding protein1e-0758.2
NC_015577:1462874:1482972148297214842281257Treponema azotonutricium ZAS-9 chromosome, complete genomeputative bacterial extracellular solute-binding protein1e-0758.2
NC_020291:6310000:6326586632658663278271242Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeABC-type sugar transport system, periplasmic component1e-0757.8
NC_006270:1119000:1145081114508111463341254Bacillus licheniformis ATCC 14580, complete genomemultiple sugar-binding protein MsmE2e-0757.8
NC_006322:1119471:1145935114593511471881254Bacillus licheniformis ATCC 14580, complete genomeMsmE2e-0757.8
NC_014656:1704101:1719034171903417203591326Bifidobacterium longum subsp. longum BBMN68 chromosome, completemale-type abc sugar transport system periplasmic component2e-0757.4
NC_014169:2407266:2410908241090824122331326Bifidobacterium longum subsp. longum JDM301 chromosome, completefamily 1 extracellular solute-binding protein2e-0757.4
NC_010816:1735937:1744248174424817455731326Bifidobacterium longum DJO10A, complete genomeMalE-type ABC sugar transport system periplasmic component2e-0757.4
NC_014206:1694330:1714328171432817156381311Geobacillus sp. C56-T3 chromosome, complete genomefamily 1 extracellular solute-binding protein4e-0756.6
NC_013642:574673:5924275924275936051179Thermotoga naphthophila RKU-10, complete genomeextracellular solute-binding protein family 15e-0756.2
NC_016641:2618587:2645924264592426471771254Paenibacillus terrae HPL-003 chromosome, complete genomefamily 1 extracellular solute-binding protein9e-0755.5
NC_015052:2383865:2388169238816923895091341Bifidobacterium longum subsp. infantis 157F, complete genomeABC transporter substrate-binding protein1e-0655.1
NC_015577:1462874:1468358146835814696891332Treponema azotonutricium ZAS-9 chromosome, complete genomeputative family 1 extracellular solute-binding protein2e-0653.9
NC_015953:5865733:5905559590555959068211263Streptomyces sp. SirexAA-E chromosome, complete genomefamily 1 extracellular solute-binding protein2e-0653.9
NC_008380:4078670:4078670407867040801481479Rhizobium leguminosarum bv. viciae 3841, complete genomeputative solute-binding component of ABC transporter3e-0653.5
NC_014364:4488875:4533226453322645345061281Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeextracellular solute-binding protein family 14e-0653.1
NC_014246:1787154:1798378179837817996131236Mobiluncus curtisii ATCC 43063 chromosome, complete genomesugar ABC transporter substrate-binding protein6e-0652.8
NC_016641:4011000:4028112402811240294521341Paenibacillus terrae HPL-003 chromosome, complete genomefamily 1 extracellular solute-binding protein6e-0652.4
NC_015578:298989:3251293251293263971269Treponema primitia ZAS-2 chromosome, complete genomeputative sugar ABC-transporter, sugar-binding protein6e-0652.4
NC_013521:302574:3200153200153212951281Sanguibacter keddieii DSM 10542, complete genomecarbohydrate-binding protein7e-0652.4
NC_015732:773143:7792277792277805101284Spirochaeta caldaria DSM 7334 chromosome, complete genomeextracellular solute-binding protein family 18e-0652
NC_016593:956839:9657569657569670451290Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completehypothetical protein8e-0652
NC_013721:1204566:1214195121419512156371443Gardnerella vaginalis 409-05, complete genomebacterial extracellular solute-binding protein1e-0552