Pre_GI Gene

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Host: NC_020134 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_020134:2832857 Clostridium stercorarium subsp. stercorarium DSM 8532, complete

Host Lineage: Clostridium stercorarium; Clostridium; unclassified Ruminococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Lignocellulosic biomass has great potential as an abundant and renewable source of fermentable sugars through enzymic saccharification. Clostridium stercorarium is a catabolically versatile bacterium producing a wide range of hydrolases for degradation of biomass. Together with Clostridium thermocellum, Clostridium aldrichii and other cellulose degraders, it forms group I of the clostridia. It is moderately thermophilic, with an optimum growth temperature of 65 degrees C, and has repeatedly been isolated from self-heated compost. The two-component cellulase system of C. stercorarium has been investigated thoroughly. Due to its ability to utilize the various polysaccharides present in biomass it is especially suited for the fermentation of hemicellulose to organic solvents. Some isolates have been used in Japan in a single-step ethanol-fermenting pilot-process with lignocellulosic biomass as substrate.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
283125728328791623Two component transcriptional regulator AraC familyQuickGO ontologyBLASTP
283285728347401884integral membrane sensor signal transduction histidine kinaseQuickGO ontologyBLASTP
283479628359981203extracellular solute-binding protein family 1QuickGO ontologyBLASTP
283619728375851389hydrogenase large subunit domain proteinQuickGO ontologyBLASTP
28376762838272597rubrerythrin-1QuickGO ontologyBLASTP
28386632839307645lipolytic protein G-D-S-L familyQuickGO ontologyBLASTP
283938528405721188amidohydrolaseQuickGO ontologyBLASTP
284080128432302430ATP-dependent protease LonAQuickGO ontologyBLASTP
284376328449711209elongation factor TuQuickGO ontologyBLASTP
284511228472052094elongation factor GQuickGO ontologyBLASTP
2847239284770947130S ribosomal protein S7QuickGO ontologyBLASTP
2847909284832241430S ribosomal protein S12QuickGO ontologyBLASTP
28484002848645246ribosomal protein HS6-typeQuickGO ontologyBLASTP
284905528508451791ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
28508852851793909transcriptional regulator AraC familyQuickGO ontologyBLASTP
28520322853651162060 kDa chaperoninQuickGO ontologyBLASTP
2853666285393827310 kDa chaperoninQuickGO ontologyBLASTP
28542682855038771type III pantothenate kinase CoaXQuickGO ontologyBLASTP
28550502855349300hypothetical protein
285541228564221011bifunctional protein biotin operon repressorbiotin--acetyl-CoA-carboxylase synthetase BirAQuickGO ontologyBLASTP