Pre_GI: BLASTP Hits

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Query: NC_009664:570768:581858 Kineococcus radiotolerans SRS30216, complete genome

Start: 581858, End: 582718, Length: 861

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013093:2599591:261118526111852612069885Actinosynnema mirum DSM 43827, complete genomeRNA polymerase, sigma 28 subunit, FliA/WhiG subfamily5e-65248
NC_015422:4395388:441599244159924416708717Alicycliphilus denitrificans K601 chromosome, complete genomeRNA polymerase sigma 28 subunit FliA/WhiG1e-25117
NC_014910:4026613:404772340477234048439717Alicycliphilus denitrificans BC chromosome, complete genomeRNA polymerase sigma factor, flia/whig family1e-25117
NC_014328:1135854:115073211507321151457726Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeRNA polymerase sigma factor for flagellar operon FliA4e-25115
NC_007298:778723:816228816228816974747Dechloromonas aromatica RCB, complete genomeSigma-70 region 41e-24114
NC_019940:293476:307389307389308144756Thioflavicoccus mobilis 8321 chromosome, complete genomeFliA/WhiG family RNA polymerase sigma factor8e-24110
NC_000919:773784:775888775888776676789Treponema pallidum subsp. pallidum str. Nichols, complete genomesigma factor WhiG3e-23109
NC_010741:775000:777336777336778124789Treponema pallidum subsp. pallidum SS14, complete genomeRNA polymerase sigma-28 factor3e-23109
NC_016844:775334:777826777826778614789Treponema pallidum subsp. pallidum DAL-1 chromosome, completeDNA-directed RNA polymerase sigma subunit WhiG2e-23109
NC_017268:775000:777138777138777926789Treponema pallidum subsp. pallidum str. Chicago chromosome,RNA polymerase sigma factor WhiG2e-23109
NC_021508:775264:777368777368778156789Treponema pallidum subsp. pallidum SS14, complete genomeDNA-directed RNA polymerase sigma subunit WhiG2e-23109
NC_015714:768500:770767770767771555789Treponema paraluiscuniculi Cuniculi A chromosome, complete genomeDNA-directed RNA polymerase sigma subunit WhiG5e-23108
NC_016842:775368:777472777472778260789Treponema pallidum subsp. pertenue str. SamoaD chromosome, completeDNA-directed RNA polymerase sigma subunit WhiG5e-23108
NC_016843:775371:777659777659778447789Treponema pallidum subsp. pertenue str. Gauthier chromosome,DNA-directed RNA polymerase sigma subunit WhiG5e-23108
NC_016848:775822:777926777926778714789Treponema pallidum subsp. pertenue str. CDC2 chromosome, completeDNA-directed RNA polymerase sigma subunit WhiG5e-23108
NC_021177:6127431:614515861451586145994837Streptomyces fulvissimus DSM 40593, complete genomeRNA polymerase sigma factor WhiG4e-23108
NC_012559:731859:747206747206747949744Laribacter hongkongensis HLHK9, complete genomeFliA13e-23108
NC_016514:2950860:295907129590712959790720Enterobacter cloacae EcWSU1 chromosome, complete genomeRNA polymerase sigma factor for flagellar operon8e-23107
NC_010572:2216309:221630922163092217145837Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative RNA polymerase sigma factor WhiG1e-22107
NC_021182:2883716:289082828908282891553726Clostridium pasteurianum BC1, complete genomeRNA polymerase sigma factor, FliA/WhiG family2e-22106
NC_015224:2017781:203906520390652039787723Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,flagellar biosynthesis sigma factor5e-22105
NC_008800:2695977:271399427139942714716723Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,flagellar biosynthesis sigma factor5e-22105
NC_014500:3023762:303527230352723035994723Dickeya dadantii 3937 chromosome, complete genomeRNA polymerase sigma-28 (sigma F) factor3e-22105
NC_004129:1848701:187106618710661871806741Pseudomonas fluorescens Pf-5, complete genomeflagellar biosynthesis sigma factor FliA9e-22104
NC_013956:2523955:252451025245102525232723Pantoea ananatis LMG 20103 chromosome, complete genomeFliA8e-22104
NC_016816:1912366:194426019442601944982723Pantoea ananatis LMG 5342, complete genomeRNA polymerase sigma factor for flagellar operon8e-22104
NC_010501:4080937:408141640814164082156741Pseudomonas putida W619, complete genomeRNA polymerase, sigma 28 subunit, FliA/WhiG8e-22104
NC_007492:1735595:175314617531461753886741Pseudomonas fluorescens PfO-1, complete genomeflagellar biosynthesis sigma factor FliA7e-22104
NC_004547:1970686:198611819861181986840723Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeflagellar biosynthesis sigma factor FliA7e-22104
NC_020291:4903981:491882649188264919557732Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeRNA polymerase sigma factor for flagellar operon2e-21103
NC_013592:1730505:174909117490911749813723Dickeya dadantii Ech586, complete genomeRNA polymerase, sigma 28 subunit, FliA/WhiG subfamily1e-21103
NC_012912:1788308:181042918104291811151723Dickeya zeae Ech1591, complete genomeRNA polymerase, sigma 28 subunit, FliA/WhiG1e-21103
NC_006177:3192500:320519732051973205958762Symbiobacterium thermophilum IAM 14863, complete genomeRNA polymerase sigma factor related to flagellar biosynthesis1e-21103
NC_003888:6103534:612104361210436121885843Streptomyces coelicolor A3(2), complete genomesigma factor WhiG1e-21103
NC_009512:1691930:171188917118891712629741Pseudomonas putida F1, complete genomeRNA polymerase, sigma 28 subunit, FliA/WhiG1e-21103
NC_002947:4931476:493147649314764932216741Pseudomonas putida KT2440, complete genomeflagellar biosynthesis sigma factor FliA1e-21103
NC_017986:4374979:439493843949384395678741Pseudomonas putida ND6 chromosome, complete genomeflagellar biosynthesis sigma factor1e-21103
NC_012880:1765920:184124818412481841970723Dickeya dadantii Ech703, complete genomeRNA polymerase, sigma 28 subunit, FliA/WhiG1e-21103
NC_012779:2281700:229874322987432299465723Edwardsiella ictaluri 93-146, complete genomeRNA polymerase sigma factor for flagellar operon2e-21102
NC_010730:1724443:172492517249251725653729Sulfurihydrogenibium sp. YO3AOP1, complete genomeRNA polymerase, sigma 28 subunit, FliA/WhiG1e-20100
NC_012778:841934:853378853378854136759Eubacterium eligens ATCC 27750, complete genomephosphatidylserine decarboxylase1e-20100
NC_012917:2921932:292819629281962928918723Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeRNA polymerase, sigma 28 subunit, FliA/WhiG1e-20100
NC_007759:1356439:136476413647641365549786Syntrophus aciditrophicus SB, complete genomeRNA polymerase flagellar sigma factor2e-2099.8
NC_015391:2059191:207239420723942073110717Carnobacterium sp. 17-4 chromosome, complete genomeRNA polymerase sigma factor SigD9e-2097.8
NC_016894:2931213:293121329312132932046834Acetobacterium woodii DSM 1030 chromosome, complete genomeRNA polymerase, sigma 28 subunit FliA1e-1997.4
NC_020409:168916:180363180363181148786Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeRNA polymerase sigma factor for flagellar operon2e-1996.7
NC_010688:2532929:255433425543342555101768Xanthomonas campestris pv. campestris, complete genomeRNA polymerase sigma factor rpoD (Sigma-70).2e-1996.3
NC_003902:2211790:222997722299772230744768Xanthomonas campestris pv. campestris str. ATCC 33913, completeRNA polymerase sigma factor2e-1996.3
NC_015222:1127675:112857711285771129293717Nitrosomonas sp. AL212 chromosome, complete genomeRNA polymerase, sigma 28 subunit, FliA/WhiG2e-1996.3
NC_009654:3849774:387059938705993871336738Marinomonas sp. MWYL1, complete genomeRNA polymerase, sigma 28 subunit, FliA/WhiG2e-1996.3
NC_007508:2234080:225143322514332252200768Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeRNA polymerase sigma factor for flagellar operon FliA3e-1995.9
NC_017267:2326443:234651123465112347278768Xanthomonas oryzae pv. oryzicola BLS256 chromosome, completeRNA polymerase sigma factor3e-1995.9
NC_003919:2233000:225816622581662258933768Xanthomonas axonopodis pv. citri str. 306, complete genomeRNA polymerase sigma factor3e-1995.9
NC_015707:705628:706734706734707471738Thermotoga thermarum DSM 5069 chromosome, complete genomeRNA polymerase, sigma 28 subunit, SigD/FliA/WhiG3e-1995.9
NC_012438:159927:161195161195161917723Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomeRNA polymerase sigma-D factor (Sigma-28)4e-1995.5
NC_014377:1089894:109924110992411099978738Thermosediminibacter oceani DSM 16646 chromosome, complete genomeRNA polymerase, sigma 28 subunit, FliA/WhiG subfamily1e-1893.6
NC_009828:600349:632038632038632748711Thermotoga lettingae TMO, complete genomeRNA polymerase, sigma 28 subunit, FliA/WhiG2e-1893.2
NC_010001:3266561:327511932751193275883765Clostridium phytofermentans ISDg, complete genomeRNA polymerase, sigma 28 subunit, FliA/WhiG8e-1890.9
NC_013940:110340:117614117614118381768Deferribacter desulfuricans SSM1 megaplasmid pDF308, completeRNA polymerase, sigma 28 subunit, FliA/WhiG family9e-1890.9
NC_008346:983816:996574996574997356783Syntrophomonas wolfei subsp. wolfei str. Goettingen, completeputative RNA polymerase sigma factor1e-1790.5
NC_017095:166896:191492191492192247756Fervidobacterium pennivorans DSM 9078 chromosome, complete genomeRNA polymerase, sigma 28 subunit, SigD/FliA/WhiG3e-1789.4
NC_014150:233194:241288241288242106819Brachyspira murdochii DSM 12563 chromosome, complete genomeRNA polymerase, sigma 28 subunit, FliA/WhiG1e-1687.4
NC_021184:2238500:225056522505652251368804Desulfotomaculum gibsoniae DSM 7213, complete genomeRNA polymerase sigma factor, FliA/WhiG family1e-1687
NC_012225:377441:389172389172389999828Brachyspira hyodysenteriae WA1, complete genomeRNA polymerase sigma factor WhiG2e-1686.3
NC_017243:1499757:151441615144161515243828Brachyspira intermedia PWS/A chromosome, complete genomeRNA polymerase sigma factor WhiG2e-1686.3
NC_009348:381752:391444391444392151708Aeromonas salmonicida subsp. salmonicida A449, complete genomeLafS7e-1684.7
NC_020411:905335:906699906699907436738Hydrogenobaculum sp. HO, complete genomeRNA polymerase, sigma 28 subunit, SigD/FliA/WhiG1e-1583.6
NC_015587:905255:906619906619907356738Hydrogenobaculum sp. SHO chromosome, complete genomeRNA polymerase, sigma 28 subunit, FliA/WhiG1e-1583.6
NC_015557:905145:906509906509907246738Hydrogenobaculum sp. 3684 chromosome, complete genomeRNA polymerase, sigma 28 subunit, FliA/WhiG1e-1583.6
NC_018604:1329228:133817613381761338988813Brachyspira pilosicoli WesB complete genomeRNA polymerase sigma factor2e-1583.2
NC_014330:2409559:242009924200992420911813Brachyspira pilosicoli 95/1000 chromosome, complete genomeRNA polymerase sigma factor2e-1583.2
NC_019908:852230:859282859282860094813Brachyspira pilosicoli P43/6/78 chromosome, complete genomeRNA polymerase sigma factor WhiG2e-1583.2
NC_018607:1134900:114385311438531144665813Brachyspira pilosicoli B2904 chromosome, complete genomeRNA polymerase sigma factor2e-1583.2
NC_011126:922182:921448921448922185738Hydrogenobaculum sp. Y04AAS1, complete genomeRNA polymerase, sigma 28 subunit, FliA/WhiG2e-1480.1
NC_020911:2921925:295782329578232958542720Octadecabacter antarcticus 307, complete genomeRNA polymerase sigma factor for flagellar operon8e-1477.8
NC_012440:659646:677627677627678256630Persephonella marina EX-H1, complete genomeRNA polymerase sigma factor for flagellar operon4e-1375.5
NC_016048:2734563:275766727576672758377711Oscillibacter valericigenes Sjm18-20, complete genomeputative RNA polymerase sigma factor4e-1375.5
NC_016109:785819:791016791016791861846Kitasatospora setae KM-6054, complete genomeputative RNA polymerase sigma factor4e-1375.5
NC_008578:591357:595878595878596741864Acidothermus cellulolyticus 11B, complete genomeRNA polymerase, sigma 28 subunit1e-1170.1
NC_011653:1728000:174502817450281745708681Thermosipho africanus TCF52B, complete genomeRNA polymerase sigma factor for flagellar operon4e-1168.9
NC_019842:484933:485381485381486169789Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,RNA polymerase sigma factor SigB5e-1168.6
NC_009725:496443:497217497217498005789Bacillus amyloliquefaciens FZB42, complete genomeSigB5e-1168.6
NC_020410:495184:495958495958496746789Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeRNA polymerase sigma-B factor5e-1168.6
NC_021177:4221309:422601242260124226878867Streptomyces fulvissimus DSM 40593, complete genomeRNA polymerase sigma factor5e-1168.6
NC_014551:483773:484547484547485335789Bacillus amyloliquefaciens DSM 7, complete genomeRNA polymerase sigma-37 factor (sigma(B))5e-1168.6
NC_017188:461177:461951461951462739789Bacillus amyloliquefaciens TA208 chromosome, complete genomeRNA polymerase sigma factor SigB5e-1168.6
NC_017190:466236:466684466684467472789Bacillus amyloliquefaciens LL3 chromosome, complete genomeRNA polymerase sigma-37 factor (sigma(B))5e-1168.6
NC_017191:467207:467981467981468769789Bacillus amyloliquefaciens XH7 chromosome, complete genomeRNA polymerase sigma factor SigB5e-1168.6
NC_008599:1489868:149019014901901490894705Campylobacter fetus subsp. fetus 82-40, complete genomeflagellar biosynthesis sigma factor FliA1e-1067.4
NC_013159:2913927:292880029288002929600801Saccharomonospora viridis DSM 43017, complete genomeRNA polymerase sigma factor, sigma-70 family1e-1067.4
NC_004193:375416:375416375416675301299886Oceanobacillus iheyensis HTE831, complete genome1e-1067
NC_013595:9149273:916531191653119166111801Streptosporangium roseum DSM 43021, complete genomeputative RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily5e-1065.1
NC_012673:2023297:202719120271912027991801Exiguobacterium sp. AT1b, complete genomeRNA polymerase, sigma 28 subunit, Sig B/F/G subfamily8e-1064.7
NC_009454:1246393:126549412654941266273780Pelotomaculum thermopropionicum SI, complete genomeDNA-directed RNA polymerase specialized sigma subunit6e-1064.7
NC_016047:637778:639621639621640409789Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeRNA polymerase sigma-B factor8e-1064.3
NC_014479:509919:510693510693511481789Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeRNA polymerase sigma factor SigB9e-1064.3
NC_019896:3491000:351722135172213518015795Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeRNA polymerase sigma factor SigB1e-0963.9
NC_000964:521975:522417522417523211795Bacillus subtilis subsp. subtilis str. 168, complete genomesigma factor B1e-0963.9
NC_014976:2735423:273726627372662738054789Bacillus subtilis BSn5 chromosome, complete genomeRNA polymerase sigma factor SigB1e-0963.5
NC_016109:5455060:5471736547173654728181083Kitasatospora setae KM-6054, complete genomeputative RNA polymerase sigma factor3e-0962.4
NC_015589:3085442:308799830879983088780783Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeRNA polymerase sigma-F factor5e-0962
NC_004193:375416:655820655820656611792Oceanobacillus iheyensis HTE831, complete genomesigma factor B6e-0961.6
NC_003155:883500:890067890067890906840Streptomyces avermitilis MA-4680, complete genomeRNA polymerase sigma factor8e-0961.2
NC_021177:4221309:422711342271134228033921Streptomyces fulvissimus DSM 40593, complete genomeRNA polymerase sigma factor1e-0860.5
NC_013595:3388000:338860033886003389376777Streptosporangium roseum DSM 43021, complete genomeputative RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily2e-0860.1
NC_013171:1194500:1219236121923612210441809Anaerococcus prevotii DSM 20548, complete genomeRNA polymerase, sigma 70 subunit, RpoD subfamily2e-0859.7
NC_016593:2370000:239025823902582391010753Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeRNA polymerase sigma-F factor2e-0859.7
NC_008699:1816392:181882118188211819633813Nocardioides sp. JS614, complete genomesigma-70 region 2 domain protein4e-0858.9
NC_015684:362236:3723743723743735401167Oligotropha carboxidovorans OM5 chromosome, complete genome5e-0858.5
NC_011386:136223:1551691551691563321164Oligotropha carboxidovorans OM5, complete genomeRNA polymerase sigma factor RpoD5e-0858.5
NC_009482:87193:958219582196795975Synechococcus sp. RCC307 chromosome, complete genomesigma-70 family RNA polymerase sigma factor9e-0857.8
NC_006582:883922:886206886206886991786Bacillus clausii KSM-K16, complete genomesigma factor B1e-0757.4
NC_014219:567033:568900568900569706807Bacillus selenitireducens MLS10 chromosome, complete genometranscriptional regulator, LuxR family3e-0756.2
NC_016783:1397975:143905514390551440044990Corynebacterium diphtheriae INCA 402 chromosome, complete genomeRNA polymerase sigma factor B4e-0755.8
NC_016789:1432000:146396714639671464956990Corynebacterium diphtheriae PW8 chromosome, complete genomeRNA polymerase sigma factor B4e-0755.8
NC_002935:1378566:143012114301211431110990Corynebacterium diphtheriae NCTC 13129, complete genomeRNA polymerase sigma factor4e-0755.8
NC_016782:1385800:141846314184631419452990Corynebacterium diphtheriae 241 chromosome, complete genomeRNA polymerase sigma factor B4e-0755.8
NC_016785:1357500:139661513966151397604990Corynebacterium diphtheriae CDCE 8392 chromosome, complete genomeRNA polymerase sigma factor B4e-0755.8
NC_016786:1359064:141872814187281419717990Corynebacterium diphtheriae HC01 chromosome, complete genomeRNA polymerase sigma factor B4e-0755.8
NC_016787:1350676:141004114100411411030990Corynebacterium diphtheriae HC03 chromosome, complete genomeRNA polymerase sigma factor B4e-0755.8
NC_016788:1376000:141350614135061414495990Corynebacterium diphtheriae HC04 chromosome, complete genomeRNA polymerase sigma factor B4e-0755.8
NC_016790:1345638:138610813861081387097990Corynebacterium diphtheriae VA01 chromosome, complete genomeRNA polymerase sigma factor B4e-0755.8
NC_016800:1411000:144660414466041447593990Corynebacterium diphtheriae BH8 chromosome, complete genomeRNA polymerase sigma factor B4e-0755.8
NC_016801:1422500:146025714602571461246990Corynebacterium diphtheriae C7 (beta) chromosome, complete genomeRNA polymerase sigma factor B4e-0755.8
NC_016802:1317365:140325414032541404243990Corynebacterium diphtheriae HC02 chromosome, complete genomeRNA polymerase sigma factor B4e-0755.8
NC_017195:2273216:229212822921282292895768Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completeRNA polymerase sigma-F factor5e-0755.5
NC_016781:1327516:132751613275161328505990Corynebacterium pseudotuberculosis 3/99-5 chromosome, completeRNA polymerase sigma factor sigB1e-0654.3
NC_016932:1309644:131240113124011313390990Corynebacterium pseudotuberculosis 316 chromosome, complete genomeRNA polymerase sigma factor sigB1e-0654.3
NC_008268:1748635:1757720175772017592821563Rhodococcus sp. RHA1, complete genomesigma factor, sigma 70 type, probable group 21e-0654.3
NC_013525:1953920:1974765197476519765551791Thermobaculum terrenum ATCC BAA-798 chromosome 1, complete genomeRNA polymerase, sigma 70 subunit, RpoD subfamily8e-0754.3
NC_018704:347948:352252352252353040789Amphibacillus xylanus NBRC 15112, complete genomeRNA polymerase sigma-B factor1e-0653.9
NC_013510:3065000:3081198308119830822801083Thermomonospora curvata DSM 43183, complete genomeRNA polymerase, sigma 70 subunit, RpoD subfamily1e-0653.5
NC_014377:1227850:123522212352221235947726Thermosediminibacter oceani DSM 16646 chromosome, complete genomeRNA polymerase, sigma subunit, RpoX/SigF2e-0653.5
NC_009380:1663545:166747116674711668469999Salinispora tropica CNB-440 chromosome, complete genomeRNA polymerase sigma factor SigB3e-0652.8
NC_010424:531727:5317275317275328091083Candidatus Desulforudis audaxviator MP104C, complete genomeRNA polymerase, sigma 70 subunit, RpoD family4e-0652.4
NC_014220:1670000:1685266168526616863511086Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomeRNA polymerase, sigma 70 subunit, RpoD subfamily1e-0550.8