Pre_GI: BLASTP Hits

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Query: NC_009512:1518113:1554501 Pseudomonas putida F1, complete genome

Start: 1554501, End: 1555880, Length: 1380

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004129:1741816:1770471177047117718501380Pseudomonas fluorescens Pf-5, complete genomesodium-solute symporter, putative4e-180630
NC_016830:1719407:1744209174420917455971389Pseudomonas fluorescens F113 chromosome, complete genomesodium-solute symporter3e-169595
NC_008148:583030:6040206040206054591440Rubrobacter xylanophilus DSM 9941, complete genomeNa+/solute symporter1e-91337
NC_014206:1694330:1694330169433016957541425Geobacillus sp. C56-T3 chromosome, complete genomeNa+/solute symporter7e-83308
NC_013411:2767400:2807071280707128084891419Geobacillus sp. Y412MC61, complete genomeNa+/solute symporter9e-83307
NC_014915:1909275:1947007194700719484251419Geobacillus sp. Y412MC52 chromosome, complete genomeNa+/solute symporter9e-83307
NC_020210:1275031:130561713056171306540924Geobacillus sp. GHH01, complete genomeNa+/solute symporter8e-50198
NC_013517:1916020:1932426193242619338771452Sebaldella termitidis ATCC 33386, complete genomeNa+/solute symporter1e-38160
NC_014330:952500:9535709535709550031434Brachyspira pilosicoli 95/1000 chromosome, complete genomeputative sodium:solute symport protein2e-28127
NC_019908:2247956:2262469226246922639021434Brachyspira pilosicoli P43/6/78 chromosome, complete genomesodium:solute symport protein2e-28127
NC_016602:2292518:2309916230991623114361521Vibrio furnissii NCTC 11218 chromosome 1, complete sequenceNa+/proline symporter2e-26120
NC_009697:419443:4194434194434208581416Clostridium botulinum A str. ATCC 19397 chromosome, completesodium:solute symporter family protein1e-23111
NC_015573:2900906:2918572291857229200171446Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeNa+/solute symporter4e-22106
NC_020054:2679676:2700817270081727022411425Fibrella aestuarina BUZ 2 drat genomeNa+/solute symporter9e-2098.6
NC_013799:1:5168516865471380Hydrogenobacter thermophilus TK-6, complete genomesodium/solute symporter5e-1996.3
NC_017161:1:5229522966081380Hydrogenobacter thermophilus TK-6 chromosome, complete genomeNa+/solute symporter4e-1996.3
NC_018870:484000:492686492686493684999Thermacetogenium phaeum DSM 12270 chromosome, complete genomeputative Na+/solute symporter5e-1892.8
NC_020291:4305521:4313018431301843144301413Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeNa+/proline symporter7e-1892.4
NC_019977:2375703:2393492239349223954081917Methanomethylovorans hollandica DSM 15978, complete genomeNa+/proline symporter8e-1892
NC_010676:2658495:2702708270270827041291422Burkholderia phytofirmans PsJN chromosome 2, complete sequenceNa+/solute symporter2e-1790.9
NC_011830:1623452:1626172162617216275991428Desulfitobacterium hafniense DCB-2, complete genomeNa+/solute symporter6e-1789
NC_020210:1275031:130671613067161307024309Geobacillus sp. GHH01, complete genomehypothetical protein2e-1687.4
NC_020409:437781:4822544822544835761323Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeputative Na+/solute symporter6e-1685.9
NC_014500:4049384:4070691407069140721121422Dickeya dadantii 3937 chromosome, complete genomesodium-solute symporter2e-1584.3
NC_015500:1236874:1258003125800312594601458Treponema brennaborense DSM 12168 chromosome, complete genomeSSS sodium solute transporter superfamily3e-1583.6
NC_013515:416760:4167604167604182381479Streptobacillus moniliformis DSM 12112, complete genomeNa+/solute symporter4e-1583.2
NC_017167:2203159:2223720222372022253421623Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1SSS sodium solute transporter superfamily protein5e-1582.8
NC_010718:2265447:2290755229075522921341380Natranaerobius thermophilus JW/NM-WN-LF, complete genomeNa+/solute symporter1e-1481.6
NC_015578:2026741:2070559207055920720221464Treponema primitia ZAS-2 chromosome, complete genomeSSS sodium solute transporter superfamily1e-1481.6
NC_013037:6281164:6335000633500063365711572Dyadobacter fermentans DSM 18053, complete genomeSSS sodium solute transporter superfamily1e-1481.6
NC_019962:1750497:1812337181233718139471611Natrinema pellirubrum DSM 15624, complete genomeSSS sodium solute transporter3e-1480.5
NC_006270:718169:7335577335577350381482Bacillus licheniformis ATCC 14580, complete genomeproline transporter4e-1479.7
NC_006322:717953:7333407333407348211482Bacillus licheniformis ATCC 14580, complete genomeOpuE4e-1479.7
NC_007677:3505487:3509872350987235114131542Salinibacter ruber DSM 13855, complete genomeNa+/solute symporter7e-1479
NC_014032:3573920:3577714357771435792551542Salinibacter ruber M8 chromosome, complete genomeNa+/solute symporter7e-1479
NC_014328:2518081:2541515254151525429361422Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative symporter9e-1478.6
NC_017068:1327025:1332667133266713340731407Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative sodium:solute symporter family protein6e-1375.9
NC_020210:1275031:1309419130941913104591041Geobacillus sp. GHH01, complete genomesodium/proline symporter2e-1273.9
NC_019904:5130458:5149179514917951506511473Echinicola vietnamensis DSM 17526 chromosome, complete genomeNa+/proline symporter2e-1273.9
NC_015634:2694706:2714055271405527155331479Bacillus coagulans 2-6 chromosome, complete genomesodium/proline symporter9e-1272
NC_016023:1769925:1772438177243817739161479Bacillus coagulans 36D1 chromosome, complete genomesodium/proline symporter1e-1171.6
NC_018605:558391:5659785659785688752898Cardinium endosymbiont cPer1 of Encarsia pergandiella, completehypothetical protein2e-1170.9
NC_016800:979494:9812959812959829531659Corynebacterium diphtheriae BH8 chromosome, complete genomeputative sodium:solute symporter2e-1170.5
NC_009655:2148433:2159191215919121605971407Actinobacillus succinogenes 130Z chromosome, complete genomeNa+ symporter5e-1169.3
NC_014329:844622:8551918551918568491659Corynebacterium pseudotuberculosis FRC41 chromosome, completehypothetical protein2e-1067.8
NC_016781:844613:8551828551828568401659Corynebacterium pseudotuberculosis 3/99-5 chromosome, completesodium/solute symporter2e-1067.8
NC_016932:832748:8433188433188449761659Corynebacterium pseudotuberculosis 316 chromosome, complete genomeSodium/solute symporter1e-1067.8
NC_009932:39348:4411044110456121503Acaryochloris marina MBIC11017 plasmid pREB7, complete sequenceNa+/solute symporter, putative3e-1067
NC_013172:466300:4663004663004679971698Brachybacterium faecium DSM 4810, complete genomeSSS sodium solute transporter4e-1066.6
NC_007333:3360000:3364944336494433666321689Thermobifida fusca YX, complete genomeputative transmembrane transport protein7e-1065.5
NC_014963:5034904:5048815504881550505361722Terriglobus saanensis SP1PR4 chromosome, complete genomeSSS sodium solute transporter superfamily protein1e-0965.1
NC_015216:652266:6522666522666538491584Methanobacterium sp. AL-21 chromosome, complete genomesodium solute transporter superfamily protein3e-0963.5
NC_011026:2269986:2301879230187923036391761Chloroherpeton thalassium ATCC 35110, complete genomeNa+/solute symporter4e-0963.2
NC_010830:1836984:1867809186780918713213513Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein6e-0962.8
NC_017347:2017097:2022381202238120239191539Staphylococcus aureus subsp. aureus T0131 chromosome, completeSodium/proline symporter7e-0962.4
NC_014836:1180454:1194784119478411961001317Desulfurispirillum indicum S5 chromosome, complete genomeNa+/solute symporter2e-0860.5
NC_012039:412837:4322264322264337041479Campylobacter lari RM2100, complete genomesodium/proline symporter3e-0860.5
NC_013522:698114:7237867237867251801395Thermanaerovibrio acidaminovorans DSM 6589, complete genomeNa+/solute symporter3e-0860.1
NC_020211:3151458:3169357316935731708411485Serratia marcescens WW4, complete genomeproline:sodium symporter8e-0858.9
NC_007514:1840971:1848972184897218507381767Chlorobium chlorochromatii CaD3, complete genomesodium:solute symporter family protein7e-0858.9
NC_010571:2041277:2044503204450320462841782Opitutus terrae PB90-1, complete genomeSSS sodium solute transporter superfamily1e-0758.2
NC_013093:7174636:7174636717463671763241689Actinosynnema mirum DSM 43827, complete genomeSSS sodium solute transporter superfamily2e-0757.8
NC_014655:17641:2348523485250681584Leadbetterella byssophila DSM 17132 chromosome, complete genomesss sodium solute transporter superfamily2e-0757.8
NC_009614:3714770:3718343371834337199141572Bacteroides vulgatus ATCC 8482 chromosome, complete genomeNa+/glucose cotransporter3e-0757
NC_016800:979494:99942799942710009921566Corynebacterium diphtheriae BH8 chromosome, complete genomesodium/proline symporter3e-0757
NC_013716:1178383:1178383117838311798911509Citrobacter rodentium ICC168, complete genomesodium/proline symporter (proline permease)5e-0756.2
NC_016513:1126263:1126263112626311277831521Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completesodium/proline symporter7e-0755.8
NC_009348:3819271:3834772383477238362921521Aeromonas salmonicida subsp. salmonicida A449, complete genomesodium/proline symporter6e-0755.8
NC_010830:867532:8832308832308861062877Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein6e-0755.8
NC_000915:53715:5622456224577141491Helicobacter pylori 26695, complete genomeproline permease (putP)6e-0755.8
NC_012881:2878000:2896672289667228981441473Desulfovibrio salexigens DSM 2638, complete genomesodium/pantothenate symporter6e-0755.8
NC_018939:53715:5622456224577141491Helicobacter pylori 26695 chromosome, complete genomesodium/proline symporter6e-0755.8
NC_012973:49208:5035350353518431491Helicobacter pylori B38 chromosome, complete genomeSymporter, SSS family (Proline Permease); membrane protein7e-0755.8
NC_013743:505842:5199445199445216321689Haloterrigena turkmenica DSM 5511, complete genomeSSS sodium solute transporter superfamily8e-0755.5
NC_008570:4009762:4022787402278740243041518Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomesodium/proline symporter1e-0655.1
NC_011149:1077589:1081970108197010834811512Salmonella enterica subsp. enterica serovar Agona str. SL483,sodium/proline symporter1e-0654.7
NC_013960:2761353:2776451277645127779711521Nitrosococcus halophilus Nc4 chromosome, complete genomesodium/proline symporter1e-0654.7
NC_014002:1129349:1139926113992611415241599Methanohalophilus mahii DSM 5219 chromosome, complete genomeSSS sodium solute transporter superfamily2e-0654.7
NC_005042:1480761:1486955148695514887181764Prochlorococcus marinus subsp. marinus str. CCMP1375, completeNa+/proline symporter2e-0654.3
NC_015563:733704:7345307345307360321503Delftia sp. Cs1-4 chromosome, complete genomesodium/proline symporter2e-0654.3
NC_014329:844622:8640028640028654321431Corynebacterium pseudotuberculosis FRC41 chromosome, completesodium/proline symporter family protein3e-0653.9
NC_013416:820989:8209898209898225091521Aggregatibacter actinomycetemcomitans D11S-1, complete genomesodium/proline symporter2e-0653.9
NC_014560:53750:5626056260577501491Helicobacter pylori SJM180 chromosome, complete genomesodium/proline symporter2e-0653.9
NC_016932:832748:8519888519888535591572Corynebacterium pseudotuberculosis 316 chromosome, complete genomeSodium/proline symporter3e-0653.5
NC_017031:863093:8638468638468652881443Corynebacterium pseudotuberculosis P54B96 chromosome, completeSodium/proline symporter3e-0653.5
NC_017301:863500:8636208636208650621443Corynebacterium pseudotuberculosis C231 chromosome, completeSodium/proline symporter3e-0653.5
NC_017303:863060:8638138638138652551443Corynebacterium pseudotuberculosis I19 chromosome, complete genomeSodium/proline symporter3e-0653.5
NC_017305:863072:8638258638258652671443Corynebacterium pseudotuberculosis PAT10 chromosome, completeSodium/proline symporter3e-0653.5
NC_010465:2582080:2601729260172926032131485Yersinia pseudotuberculosis YPIII, complete genomesodium/proline symporter3e-0653.5
NC_014029:2388500:2409373240937324108571485Yersinia pestis Z176003 chromosome, complete genomeproline permease3e-0653.5
NC_016781:844613:8639938639938654351443Corynebacterium pseudotuberculosis 3/99-5 chromosome, completesodium/proline symporter3e-0653.5
NC_017300:863898:8638988638988653401443Corynebacterium pseudotuberculosis 1002 chromosome, completeSodium/proline symporter3e-0653.5
NC_013716:1618249:1623296162329616247831488Citrobacter rodentium ICC168, complete genomeputative sodium/pantothenate symporter (pantothenate permease)4e-0653.1
NC_006905:1186895:1191279119127911927871509Salmonella enterica subsp. enterica serovar Choleraesuis strSSS family, major sodium/proline symporter6e-0652.8
NC_010830:1038292:1064041106404110673583318Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein5e-0652.8
NC_009328:293000:3261563261563276251470Geobacillus thermodenitrificans NG80-2 chromosome, complete genomesodium/panthothenate symporter5e-0652.8
NC_003197:1207597:1211980121198012134881509Salmonella typhimurium LT2, complete genomemajor sodium/proline symporter7e-0652.4
NC_011083:1216500:1216709121670912182171509Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,sodium/proline symporter7e-0652.4
NC_012125:2646792:2661788266178826632781491Salmonella enterica subsp. enterica serovar Paratyphi C strainsodium/proline symporter7e-0652.4
NC_010102:1979742:1994562199456219960521491Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein7e-0652.4
NC_004631:1842050:1857234185723418587421509Salmonella enterica subsp. enterica serovar Typhi Ty2, completesodium/proline symporter7e-0652.4
NC_003198:1117687:1122071112207111235791509Salmonella enterica subsp. enterica serovar Typhi str. CT18,sodium/proline symporter (proline permease)7e-0652.4
NC_009634:1002295:1017788101778810193891602Methanococcus vannielii SB chromosome, complete genomeSSS family solute/sodium (Na+) symporter7e-0652.4
NC_010830:1291415:1311226131122613145763351Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein7e-0652.4
NC_011147:1763681:1780018178001817815261509Salmonella enterica subsp. enterica serovar Paratyphi A strsodium/proline symporter8e-0652.4
NC_011080:1209935:1214319121431912158271509Salmonella enterica subsp. enterica serovar Newport str. SL254,sodium/proline symporter7e-0652.4
NC_011094:1166271:1170655117065511721631509Salmonella enterica subsp. enterica serovar Schwarzengrund strsodium/proline symporter7e-0652.4
NC_011205:1186097:1190480119048011919881509Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853sodium/proline symporter7e-0652.4
NC_016857:1163919:1168300116830011698111512Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74major sodium/proline symporter7e-0652.4
NC_016832:1838220:1854084185408418555741491Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Sodium/proline symporter7e-0652.4
NC_017046:1164176:1168560116856011700681509Salmonella enterica subsp. enterica serovar Typhimurium str. 798sodium/proline symporter (proline permease)7e-0652.4
NC_016863:1165232:1169616116961611711241509Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1major sodium/proline symporter7e-0652.4
NC_016860:1205282:1209666120966612111741509Salmonella enterica subsp. enterica serovar Typhimurium strsodium/proline symporter7e-0652.4
NC_016856:1165941:1170325117032511718331509Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Smajor sodium/proline symporter7e-0652.4
NC_016810:1163919:1168303116830311698111509Salmonella enterica subsp. enterica serovar Typhimurium strsodium/proline symporter (proline permease)7e-0652.4
NC_011294:1085447:1089849108984910913571509Salmonella enterica subsp. enterica serovar Enteritidis strsodium/proline symporter7e-0652.4
NC_011274:1094379:1098763109876311002711509Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91sodium/proline symporter7e-0652.4
NC_006511:1770000:1784835178483517863431509Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCsodium/proline symporter (proline permease)8e-0652.4