Pre_GI Gene

Some Help

Host: NC_012125 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012125:2646792 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
26467922647625834assemblytransport component in curli productionQuickGO ontologyBLASTP
26476632648157495hypothetical proteinBLASTP
26482462648800555hypothetical proteinBLASTP
26488242649561738hydrolaseQuickGO ontologyBLASTP
264964626505849392-hydroxyacid dehydrogenaseQuickGO ontologyBLASTP
2650820265090788tRNA-SerQuickGO ontologyBLASTP
265124426523501107oxidoreductaseQuickGO ontologyBLASTP
265236126536411281sialic acid transporterQuickGO ontologyBLASTP
265466126558151155N-acetylneuraminic acid mutarotaseQuickGO ontologyBLASTP
26563212657001681N-acetylmannosamine-6-phosphate 2-epimeraseQuickGO ontologyBLASTP
265733826588341497sodiumglucose cotransporterQuickGO ontologyBLASTP
26591202660001882transcriptional regulatorQuickGO ontologyBLASTP
26601072660961855hypothetical proteinBLASTP
266178826632781491sodiumproline symporterQuickGO ontologyBLASTP
266371826676803963trifunctional transcriptional regulatorproline dehydrogenasepyrroline-5-carboxylate dehydrogenaseQuickGO ontologyBLASTP
26677392668134396hypothetical proteinBLASTP
26681312668769639transcriptional regulatorQuickGO ontologyBLASTP