Pre_GI: BLASTP Hits

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Query: NC_009480:703102:707376 Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete

Start: 707376, End: 707744, Length: 369

Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Phytopathogen that causes bacterial wilt and canker of tomato (Lycopersicon esculentum). This is considered to be the most important bacterial disease of tomato causing substantial economic losses worldwide. Bacteria enter the plant by wounds on root or stem and then find their way into the xylem allowing a massive systemic colonization. The first stage of the disease is characterized by unilateral wilting of leaves. Wilting then spreads to all leaves, canker lesions develop on the stem and the plant dies. If infection occurs at a late stage of plant development, plants can survive and yield fruit that may have spots, so called bird's eyes. Often the seeds will be infected and this has been the major source for outbreaks of Clavibacter michiganensis subsp. michiganensis infections in agriculture. Members of the Clavibacter genus are known to produce antimicrobial compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013235:593289:609126609126609497372Nakamurella multipartita DSM 44233, complete genometranscriptional regulator, GntR family3e-22103
NC_013174:601434:618920618920619279360Jonesia denitrificans DSM 20603, complete genometranscriptional regulator, GntR family2e-1581.3
NC_020133:4889034:490252549025254902890366Mycobacterium liflandii 128FXT, complete genometranscriptional regulatory protein4e-1580.1
NC_018524:1279156:1301474130147413030301557Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomebacterial regulatory s, gntR family protein3e-1270.9
NC_015949:47414:482944829448677384Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeGntR family transcriptional regulator4e-1167
NC_012778:1946924:195058319505831950966384Eubacterium eligens ATCC 27750, complete genomeGntR family transcriptional regulator / MocR family aminotransferase5e-1166.6
UCMB5137:2128500:214259721425972142974378Bacillus atrophaeus UCMB-5137GntR family transcriptional regulator1e-1065.1
NC_014328:4387303:442000144200014420978978Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative regulatory protein1e-1065.1
NC_018515:4442500:445361844536184454571954Desulfosporosinus meridiei DSM 13257 chromosome, complete genometranscriptional regulator2e-1064.3
NC_000853:771746:792240792240792605366Thermotoga maritima MSB8, complete genometranscriptional regulator, GntR family3e-1063.9
NC_014639:2169277:217930621793062179683378Bacillus atrophaeus 1942 chromosome, complete genomeGntR family transcriptional regulator4e-1063.5
CP002207:2169277:217930621793062179683378Bacillus atrophaeus 1942, complete genomeGntR family transcriptional regulator4e-1063.5
NC_009725:2859630:286726728672672867659393Bacillus amyloliquefaciens FZB42, complete genomeYtrA7e-1062.8
NC_010001:2836995:285926328592632859625363Clostridium phytofermentans ISDg, complete genometranscriptional regulator, GntR family7e-1062.8
NC_011146:3537546:3546585354658535479791395Geobacter bemidjiensis Bem, complete genomeputative transcriptional regulator, GntR family6e-1062.8
NC_004557:2711702:272619827261982727172975Clostridium tetani E88, complete genometranscriptional regulator, putative regular for glutamate degradation6e-1062.8
NC_009486:155651:155651155651156016366Thermotoga petrophila RKU-1 chromosome, complete genomeregulatory protein GntR9e-1062.4
NC_013642:545464:565944565944566309366Thermotoga naphthophila RKU-10, complete genometranscriptional regulator, GntR family9e-1062.4
NC_013205:1275012:129900712990071299420414Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,transcriptional regulator, GntR family3e-0960.8
NC_013165:329185:374694374694375074381Slackia heliotrinireducens DSM 20476, complete genomepredicted transcriptional regulator3e-0960.5
NC_013730:3137391:3153355315335531547941440Spirosoma linguale DSM 74, complete genometranscriptional regulator, GntR family with aminotransferase domain5e-0960.1
NC_019897:329945:376575376575376955381Thermobacillus composti KWC4 chromosome, complete genometranscriptional regulator4e-0960.1
NC_002976:1540794:154170815417081542085378Staphylococcus epidermidis RP62A, complete genometranscriptional regulator, GntR family6e-0959.7
NC_017219:2014605:202231920223192022693375Bifidobacterium longum subsp. infantis ATCC 15697, complete genometranscriptional regulator7e-0959.3
NC_011593:2014787:202250120225012022875375Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,regulatory protein GntR7e-0959.3
NC_014098:1670327:1683243168324316846461404Bacillus tusciae DSM 2912 chromosome, complete genometranscriptional regulator, GntR family with aminotransferase domain8e-0959.3
NC_020829:5382500:5383064538306453845121449Pseudomonas denitrificans ATCC 13867, complete genomeGntR family transcriptional regulator1e-0858.5
NC_013166:82986:869848698487373390Kangiella koreensis DSM 16069, complete genometranscriptional regulator, GntR family1e-0858.5
NC_009848:161373:170355170355170726372Bacillus pumilus SAFR-032, complete genomeGntR family transcriptional regulator1e-0858.5
NC_020164:887510:906911906911907288378Staphylococcus warneri SG1, complete genomeGntR family transcriptional regulator1e-0858.5
NC_014815:3272791:327794232779423278337396Micromonospora sp. L5 chromosome, complete genometranscriptional regulator, gntr family1e-0858.5
NC_009482:87193:8719387193882931101Synechococcus sp. RCC307 chromosome, complete genometranscriptional regulator2e-0857.8
NC_009654:91096:9749297492990691578Marinomonas sp. MWYL1, complete genomeGntR family transcriptional regulator3e-0857.4
NC_005071:87907:135307135307136296990Prochlorococcus marinus str. MIT 9313, complete genomepossible transcriptional regulator3e-0857.4
NC_006526:1976779:1999286199928620006591374Zymomonas mobilis subsp. mobilis ZM4, complete genometranscriptional regulatory protein3e-0857
NC_011001:568970:5872385872385886231386Burkholderia cenocepacia J2315 chromosome 2, complete sequenceGntR family regulatory protein3e-0857
NC_009952:592000:6018436018436033871545Dinoroseobacter shibae DFL 12, complete genometranscriptional regulator, GntR family with aminotransferase domain4e-0856.6
NC_009633:1595501:1620053162005316214501398Alkaliphilus metalliredigens QYMF chromosome, complete genomeGntR family transcriptional regulator6e-0856.2
NC_011837:238160:267607267607268584978Clostridium kluyveri NBRC 12016, complete genomehypothetical protein8e-0855.8
NC_009706:238160:267607267607268584978Clostridium kluyveri DSM 555 chromosome, complete genometranscriptional regulator8e-0855.8
NC_018515:1406816:142889914288991429282384Desulfosporosinus meridiei DSM 13257 chromosome, complete genometranscriptional regulator8e-0855.8
NC_006582:1297039:1310905131090513123201416Bacillus clausii KSM-K16, complete genometranscriptional regulator, GntR family1e-0755.5
NC_008314:1559102:1578044157804415794771434Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator, MocR family2e-0754.7
NC_010627:233572:250052250052250774723Burkholderia phymatum STM815 plasmid pBPHY02, complete sequencetranscriptional regulator, GntR family2e-0754.7
NC_016109:116995:143044143044143424381Kitasatospora setae KM-6054, complete genomeGntR family transcriptional regulator2e-0754.7
NC_010999:2450974:245773324577332458107375Lactobacillus casei, complete genomeRegulatory protein GntR, HTH2e-0754.3
NC_016631:5478098:550109155010915501534444Granulicella mallensis MP5ACTX8 chromosome, complete genomeGntR family transcriptional regulator2e-0754.3
NC_021184:504728:5106275106275121441518Desulfotomaculum gibsoniae DSM 7213, complete genometranscriptional regulator with HTH domain and aminotransferase domain2e-0754.3
NC_013235:3913000:392692739269273927319393Nakamurella multipartita DSM 44233, complete genometranscriptional regulator, GntR family2e-0754.3
NC_012034:1049454:106628310662831066645363Anaerocellum thermophilum DSM 6725, complete genometranscriptional regulator, GntR family3e-0753.9
NC_010001:3369500:3372248337224833736391392Clostridium phytofermentans ISDg, complete genometranscriptional regulator, GntR family with aminotransferase domain3e-0753.9
NC_014935:836868:8527328527328541231392Nitratifractor saLSUginis DSM 16511 chromosome, complete genometranscriptional regulator, gntr family with aminotransferase domain protein3e-0753.9
NC_014833:1045180:106518010651801065554375Ruminococcus albus 7 chromosome, complete genomeGntR family transcriptional regulator4e-0753.5
NC_003155:6667928:667252966725296673287759Streptomyces avermitilis MA-4680, complete genomeGntR-family transcriptional regulator4e-0753.5
NC_011750:2928990:2968066296806629694001335Escherichia coli IAI39 chromosome, complete genomebifunctional aminotransaminase/GntR family transcriptional regulator4e-0753.5
NC_012781:2148478:215126721512672151716450Eubacterium rectale ATCC 33656, complete genometranscriptional regulator, GntR family4e-0753.5
NC_016047:2150000:2171025217102521724311407Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeCrp/Fnr family transcriptional regulator4e-0753.5
NC_016943:1956719:196450919645091964916408Blastococcus saxobsidens DD2, complete genomeGntR family transcriptional regulator3e-0753.5
NC_013729:2157785:217111721711172171860744Kribbella flavida DSM 17836, complete genometranscriptional regulator, GntR family6e-0753.1
NC_013282:551219:5826725826725841591488Cronobacter turicensis, complete genomeUncharacterized HTH-type transcriptional regulator yjiR5e-0753.1
AC_000091:4569379:4574842457484245762541413Escherichia coli W3110 DNA, complete genomefused predicted DNA-binding transcriptional regulator and predicted aminotransferase5e-0753.1
NC_012759:4501206:4506669450666945080811413Escherichia coli BW2952 chromosome, complete genomefused putative DNA-binding transcriptional regulator/putative aminotransferase5e-0753.1
NC_010623:1871492:1919564191956419211351572Burkholderia phymatum STM815 chromosome 2, complete sequencetranscriptional regulator, GntR family with aminotransferase domain5e-0753.1
NC_011894:6888562:6924268692426869256981431Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, GntR family with aminotransferase domain protein6e-0752.8
NC_010556:6612:1726217262186561395Exiguobacterium sibiricum 255-15, complete genomeputative transcriptional regulator, GntR family9e-0752.4
NC_014393:92500:928219282193204384Clostridium cellulovorans 743B chromosome, complete genometranscriptional regulator, GntR family8e-0752.4
NC_014363:114239:129522129522129881360Olsenella uli DSM 7084 chromosome, complete genometranscriptional regulator, GntR family8e-0752.4
NC_014479:509919:5384715384715398621392Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeputative PLP-dependent transcriptional regulator1e-0652
NC_017075:4259460:4274291427429142757481458Rubrivivax gelatinosus IL144, complete genomeDeoR family transcriptional regulator1e-0652
NC_015589:3085442:309769230976923098066375Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeregulatory protein GntR1e-0652
NC_015161:162000:1759481759481773361389Deinococcus proteolyticus MRP chromosome, complete genometranscriptional regulator, GntR family with aminotransferase domain1e-0652
NC_010468:4059436:4075244407524440766561413Escherichia coli ATCC 8739, complete genometranscriptional regulator, GntR family with aminotransferase domain1e-0652
NC_020063:4127161:4127161412716141285881428Enterobacteriaceae bacterium strain FGI 57, complete genometranscriptional regulator with HTH domain and aminotransferase domain1e-0652
NC_008543:323773:3420733420733434581386Burkholderia cenocepacia HI2424 chromosome 2, complete sequencetranscriptional regulator, GntR family1e-0652
NC_018665:1:1721317213186071395Exiguobacterium antarcticum B7 chromosome, complete genomeTranscriptional regulator, GntR family1e-0652
NC_016582:9664000:967760596776059678303699Streptomyces bingchenggensis BCW-1 chromosome, complete genomeGntR family transcriptional regulator2e-0651.6
NC_016047:683368:6849566849566863471392Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completehypothetical protein2e-0651.6
NC_008593:1917118:191914919191491919529381Clostridium novyi NT, complete genometranscriptional regulator, gntR family1e-0651.6
NC_007963:1190847:1232194123219412335251332Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, GntR family2e-0651.2
NC_018750:1092224:1109142110914211104611320Streptomyces venezuelae ATCC 10712, complete genomePredicted transcriptional regulator of pyridoxine metabolism2e-0651.2
NC_015424:748785:7710947710947724701377Aeromonas veronii B565 chromosome, complete genomeGntR family transcriptional regulator/class I and II aminotransferase family protein2e-0651.2
NC_014815:5888934:590554959055495906340792Micromonospora sp. L5 chromosome, complete genometranscriptional regulator, gntr family2e-0651.2
NC_015957:8103472:812814981281498128580432Streptomyces violaceusniger Tu 4113 chromosome, complete genomeGntR family transcriptional regulator2e-0651.2
NC_008346:2579756:258415125841512584543393Syntrophomonas wolfei subsp. wolfei str. Goettingen, completetranscriptional regulator, GntR family2e-0651.2
NC_013595:3541012:355596035559603556841882Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, GntR family3e-0650.8
NC_020541:1827689:1844099184409918455081410Rhodanobacter sp. 2APBS1, complete genometranscriptional regulator with HTH domain and aminotransferase domain2e-0650.8
NC_009615:1446132:1452450145245014538711422Parabacteroides distasonis ATCC 8503 chromosome, complete genometranscriptional regulator2e-0650.8
NC_012815:1092795:109367010936701094206537Bifidobacterium animalis subsp. lactis DSM 10140, complete genomehypothetical protein4e-0650.4
NC_012814:1092860:109373510937351094271537Bifidobacterium animalis subsp. lactis Bl-04, complete genomehypothetical protein4e-0650.4
NC_017217:1092916:109379110937911094327537Bifidobacterium animalis subsp. lactis V9 chromosome, completehypothetical protein4e-0650.4
NC_017214:1727676:172855117285511729246696Bifidobacterium animalis subsp. lactis BB-12 chromosome, completeGntR family transcriptional regulator4e-0650.4
NC_017215:1091941:109343310934331094128696Bifidobacterium animalis subsp. lactis CNCM I-2494 chromosome,GntR family transcriptional regulator4e-0650.4
NC_020126:9795534:9800083980008398015191437Myxococcus stipitatus DSM 14675, complete genomeGntR family transcriptional regulator4e-0650.4
NC_007644:1352794:135436113543611355110750Moorella thermoacetica ATCC 39073, complete genomeregulatory protein GntR, HTH3e-0650.4
NC_017195:517344:5541435541435555341392Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completeYdeL3e-0650.4
NC_020209:397376:4341884341884355131326Pseudomonas poae RE*1-1-14, complete genomeGntR family transcriptional regulator3e-0650.4
NC_020244:516993:5497625497625511531392Bacillus subtilis XF-1, complete genomeputative PLP-dependent transcriptional regulator3e-0650.4
NC_013510:5115500:512128951212895122107819Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, GntR family5e-0650.1
NC_008686:1383891:1403811140381114052531443Paracoccus denitrificans PD1222 chromosome 1, complete sequenceputative transcriptional regulator, GntR family4e-0650.1
NC_014815:5888934:589798058979805898219240Micromonospora sp. L5 chromosome, complete genomeregulatory protein gntr hth4e-0650.1
NC_011835:1819707:182058218205821821001420Bifidobacterium animalis subsp. lactis AD011 chromosome, completeregulatory protein GntR6e-0649.7
NC_017216:1092751:109362610936261094045420Bifidobacterium animalis subsp. lactis BLC1, complete genometranscriptional regulator, gntR family protein6e-0649.7
NC_013510:5499447:551930455193045519582279Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, GntR family5e-0649.7
NC_016835:128757:1459111459111474551545Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq201,transcriptional regulator with HTH domain and aminotransferase domain5e-0649.7
NC_014323:1196209:1197605119760511991551551Herbaspirillum seropedicae SmR1 chromosome, complete genomeMocR family transcription regulator protein8e-0649.3
NC_014118:1559770:1566130156613015676531524Burkholderia sp. CCGE1002 chromosome chromosome 2, completetranscriptional regulator, GntR family with aminotransferase domain8e-0649.3
NC_016626:1825845:1851434185143418528551422Burkholderia sp. YI23 plasmid byi_1p, complete sequenceGntR family transcriptional regulator8e-0649.3
NC_007005:3684099:3694067369406736954851419Pseudomonas syringae pv. syringae B728a, complete genomeregulatory protein, GntR:Aminotransferase, class I and II8e-0649.3
NC_013159:2913927:292700029270002927257258Saccharomonospora viridis DSM 43017, complete genometranscriptional regulator7e-0649.3
NC_014623:723089:7281987281987296431446Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeGntR family transcriptional regulator/aminotransferase7e-0649.3
NC_011894:4013830:4040962404096240423561395Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, GntR family with aminotransferase domain protein7e-0649.3
NC_006510:746814:7646947646947660731380Geobacillus kaustophilus HTA426, complete genometranscriptional regulator (GntR family)7e-0649.3
NC_013446:2164974:217640621764062177260855Comamonas testosteroni CNB-2, complete genomeputative transcriptional regulator, GntR family7e-0649.3
NC_016593:762216:7800187800187813971380Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completetranscriptional regulator (GntR family)7e-0649.3
NC_016625:171341:1932201932201946261407Burkholderia sp. YI23 chromosome 2, complete sequencetranscriptional regulator9e-0648.9
NC_008463:3394000:3411438341143834128621425Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative transcriptional regulator, GntR9e-0648.9
NC_011770:3626000:3643062364306236444861425Pseudomonas aeruginosa LESB58, complete genomeputative transcriptional regulator9e-0648.9