Pre_GI: BLASTP Hits

Some Help

Query: NC_009439:3394174:3393035 Pseudomonas mendocina ymp, complete genome

Start: 3393035, End: 3394177, Length: 1143

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002516:1236644:1259291125929112604421152Pseudomonas aeruginosa PAO1, complete genomesuccinyl-diaminopimelate desuccinylase5e-169593
NC_008700:1994829:2012345201234520134931149Shewanella amazonensis SB2B, complete genomesuccinyl-diaminopimelate desuccinylase2e-121436
NC_007645:5397526:5403120540312054042711152Hahella chejuensis KCTC 2396, complete genomesuccinyl-diaminopimelate desuccinylase3e-121435
NC_013959:1428381:1428381142838114295111131Sideroxydans lithotrophicus ES-1 chromosome, complete genomesuccinyl-diaminopimelate desuccinylase4e-119428
NC_008321:2190000:2205418220541822065631146Shewanella sp. MR-4, complete genomesuccinyl-diaminopimelate desuccinylase5e-115414
NC_015761:2444833:2465547246554724666741128Salmonella bongori NCTC 12419, complete genomesuccinyl-diaminopimelate desuccinylase2e-111402
NC_013961:2579000:2581127258112725822541128Erwinia amylovora, complete genomeN-succinyl-diaminopimelate deacylase4e-111401
NC_013971:2617000:2618655261865526197821128Erwinia amylovora ATCC 49946 chromosome, complete genomesuccinyl-diaminopimelate desuccinylase4e-111401
NC_006300:600516:6280576280576291901134Mannheimia succiniciproducens MBEL55E, complete genomesuccinyl-diaminopimelate desuccinylase2e-108392
NC_009655:866281:8668698668698679991131Actinobacillus succinogenes 130Z chromosome, complete genomesuccinyl-diaminopimelate desuccinylase1e-107390
NC_010531:428000:4452004452004463511152Polynucleobacter necessarius STIR1, complete genomesuccinyl-diaminopimelate desuccinylase2e-97355
NC_012791:2832001:2861987286198728631621176Variovorax paradoxus S110 chromosome 1, complete genomesuccinyl-diaminopimelate desuccinylase3e-96352
NC_013446:2655955:2679833267983326810141182Comamonas testosteroni CNB-2, complete genomesuccinyl-diaminopimelate desuccinylase2e-94346
NC_004545:96422:9858998589997221134Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genomesuccinyl-diaminopimelate desuccinylase8e-91333
NC_020075:637420:6395976395976407511155Candidatus Blochmannia chromaiodes str. 640, complete genomesuccinyl-diaminopimelate desuccinylase5e-76285
NC_012985:465354:4804614804614816301170Candidatus Liberibacter asiaticus str. psy62, complete genomesuccinyl-diaminopimelate desuccinylase3e-61236
NC_014774:239865:2408272408272419241098Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, completesuccinyl-diaminopimelate desuccinylase8e-60231
NC_019907:46994:5016650166513561191Liberibacter crescens BT-1 chromosome, complete genomeN-succinyl-L,L-diaminopimelate desuccinylase2e-59230
NC_009883:1492425:1520347152034715215221176Rickettsia bellii OSU 85-389, complete genomeSuccinyl-diaminopimelate desuccinylase5e-56218
NC_007940:1485006:1513443151344315146181176Rickettsia bellii RML369-C, complete genomeSuccinyl-diaminopimelate desuccinylase4e-56218
NC_013949:939695:9598689598689612051338Helicobacter mustelae 12198 chromosome, complete genomesuccinyl-diaminopimelate desuccinylase3e-45182
NC_008043:86470:8848288482896691188Silicibacter sp. TM1040 mega plasmid, complete sequencepeptidase M209e-41167
NC_004461:205068:2059622059622071791218Staphylococcus epidermidis ATCC 12228, complete genomehypothetical protein7e-1892
NC_009328:293000:3276293276293288581230Geobacillus thermodenitrificans NG80-2 chromosome, complete genomehypothetical protein1e-1584.3
NC_000909:404961:4079534079534091851233Methanocaldococcus jannaschii DSM 2661, complete genomesuccinyl-diaminopimelate desuccinylase2e-1584
NC_017353:361350:3887563887563899761221Staphylococcus lugdunensis N920143, complete genomeputative peptidase4e-1582.8
NC_014761:1715377:1715377171537717164891113Oceanithermus profundus DSM 14977 chromosome, complete genomepeptidase m202e-1480.1
NC_008525:108687:1219901219901231411152Pediococcus pentosaceus ATCC 25745, complete genomeAcetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase related deacylase7e-1478.6
NC_013887:1668913:1672227167222716734561230Methanocaldococcus sp. FS406-22 chromosome, complete genomeacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase1e-1377.8
NC_020164:280087:2960722960722972921221Staphylococcus warneri SG1, complete genomesuccinyl-diaminopimelate desuccinylase1e-1377.4
NC_013156:633475:6497946497946510231230Methanocaldococcus fervens AG86, complete genomeacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase2e-1377.4
NC_016070:719791:7271507271507283941245Thermoproteus tenax Kra 1, complete genomesuccinyl-diaminopimelate desuccinylase4e-1376.3
NC_019791:638500:6584156584156596501236Caldisphaera lagunensis DSM 15908 chromosome, complete genomeacetylornithine deacetylase/succinyl-diaminopimelate desuccinylase1e-1274.7
NC_011283:1811000:1875052187505218762121161Klebsiella pneumoniae 342 chromosome, complete genomeacetylornithine deacetylase1e-1274.7
NC_014328:3294086:3302619330261933038031185Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative deacetylase2e-1273.9
NC_010525:1314999:1315805131580513170041200Thermoproteus neutrophilus V24Sta, complete genomeacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase2e-1273.9
NC_010085:1174917:1186038118603811871651128Nitrosopumilus maritimus SCM1, complete genomeN-acetyl-ornithine/N-acetyl-lysine deacetylase2e-1273.9
NC_013315:3532721:3547141354714135483281188Clostridium difficile CD196 chromosome, complete genomepeptidase2e-1273.6
NC_017179:3540739:3555159355515935563461188Clostridium difficile BI1, complete genomepeptidase2e-1273.6
NC_014205:622627:6405366405366417681233Staphylothermus hellenicus DSM 12710 chromosome, complete genomeacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase6e-1272.4
NC_012632:538967:5511565511565523671212Sulfolobus islandicus M.16.27 chromosome, complete genomesuccinyl-diaminopimelate desuccinylase1e-1171.6
NC_010557:1030319:1031304103130410324761173Burkholderia ambifaria MC40-6 chromosome 3, complete sequenceacetylornithine deacetylase (ArgE)1e-1170.9
NC_014323:3669704:3675217367521736764191203Herbaspirillum seropedicae SmR1 chromosome, complete genomeacetylornithine deacetylase2e-1170.5
NC_012623:2004786:2018798201879820200091212Sulfolobus islandicus Y.N.15.51 chromosome, complete genomesuccinyl-diaminopimelate desuccinylase3e-1170.1
NC_009033:133800:1402961402961415341239Staphylothermus marinus F1, complete genomeacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase4e-1169.7
NC_013315:2232339:2245359224535922465461188Clostridium difficile CD196 chromosome, complete genomepeptidase4e-1169.3
NC_013316:2309694:2325913232591323271001188Clostridium difficile R20291, complete genomeputative amidohydrolase4e-1169.3
NC_007963:2644930:2676414267641426776221209Chromohalobacter salexigens DSM 3043, complete genomeacetylornithine deacetylase (ArgE)5e-1169.3
NC_005791:1377736:1381339138133913825861248Methanococcus maripaludis S2, complete genomesuccinyl-diaminopimelate desuccinylase7e-1168.6
NC_010512:1196616:1212286121228612134491164Burkholderia cenocepacia MC0-3 chromosome 3, complete sequenceacetylornithine deacetylase (ArgE)7e-1168.6
NC_014299:218252:2305292305292318331305Halalkalicoccus jeotgali B3 plasmid 2, complete sequenceacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase7e-1168.6
NC_015562:899030:9196499196499209231275Methanotorris igneus Kol 5 chromosome, complete genomeacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase4e-1066.2
NC_015847:1462068:1465672146567214669191248Methanococcus maripaludis XI chromosome, complete genomediaminopimelate aminotransferase6e-1065.5
NC_011978:699500:7183917183917195901200Thermotoga neapolitana DSM 4359, complete genomeSuccinyl-diaminopimelate desuccinylase6e-1065.5
NC_014364:111000:1216401216401228181179Spirochaeta smaragdinae DSM 11293 chromosome, complete genomepeptidase M209e-1065.1
NC_013850:2685835:2709863270986327110051143Klebsiella variicola At-22 chromosome, complete genomeacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase1e-0964.3
NC_011283:2684046:2705067270506727062091143Klebsiella pneumoniae 342 chromosome, complete genomepeptidase, ArgE/DapE family2e-0963.9
NC_009648:1914621:1917454191745419185961143Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative acetylornithine deacetylase2e-0963.9
NC_012731:2650603:2653466265346626546081143Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative acetylornithine deacetylase2e-0963.9
NC_016845:2691129:2693983269398326951251143Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative acetylornithine deacetylase2e-0963.9
NC_009975:1163918:1179496117949611807431248Methanococcus maripaludis C6, complete genomeacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase2e-0963.9
NC_014210:3170537:3173183317318331744661284Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase2e-0963.5
NC_009637:646092:6496956496956509421248Methanococcus maripaludis C7 chromosome, complete genomediaminopimelate aminotransferase2e-0963.5
NC_009135:130159:1457431457431469901248Methanococcus maripaludis C5, complete genomeacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase5e-0962.4
NC_009051:1455183:1455183145518314563491167Methanoculleus marisnigri JR1, complete genomeacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase8e-0962
NC_021182:434351:4420504420504432341185Clostridium pasteurianum BC1, complete genomeacetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase7e-0962
NC_009634:759372:7629617629617642081248Methanococcus vannielii SB chromosome, complete genomediaminopimelate aminotransferase6e-0962
NC_014820:71565:1003621003621014441083Cenarchaeum symbiosum A, complete genomeacetylornithine deacetylase/succinyl-diaminopimelate desuccinylase9e-0961.6
NC_007759:1571425:1595000159500015962531254Syntrophus aciditrophicus SB, complete genomesuccinyl-diaminopimelate desuccinylase9e-0961.6
NC_016070:719791:7225897225897237821194Thermoproteus tenax Kra 1, complete genomesuccinyl-diaminopimelate desuccinylase1e-0861.6
NC_014961:490551:5049035049035061351233Desulfurococcus mucosus DSM 2162 chromosome, complete genomeacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase1e-0861.2
NC_008544:818730:8373698373698386281260Burkholderia cenocepacia HI2424 chromosome 3, complete sequenceacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase1e-0861.2
NC_018643:857911:8887898887898899671179Alpha proteobacterium HIMB5 chromosome, complete genomeacetylornithine deacetylase ArgE1e-0861.2
NC_019978:1022209:1029430102943010306291200Halobacteroides halobius DSM 5150, complete genomeM20/DapE family protein YgeY/putative selenium metabolism hydrolase1e-0861.2
NC_014654:2311818:2323898232389823251361239Halanaerobium sp. 'sapolanicus' chromosome, complete genomeM20/DapE family protein YgeY2e-0860.5
NC_018870:1695588:1724306172430617256371332Thermacetogenium phaeum DSM 12270 chromosome, complete genomepeptidase ArgE/DapE family3e-0859.7
NC_015518:179938:1982971982971995111215Acidianus hospitalis W1 chromosome, complete genomesuccinyl-diaminopimelate desuccinylase6e-0858.9
NC_013741:1304000:1319234131923413204391206Archaeoglobus profundus DSM 5631, complete genomeacetylornithine deacetylase or succinyl- diaminopimelate desuccinylase8e-0858.5
NC_008314:477722:5175305175305187051176Ralstonia eutropha H16 chromosome 2, complete sequenceacetylornithine deacetylase7e-0858.5
NC_007493:1672163:1676870167687016782821413Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequencehypothetical protein2e-0757
NC_016751:1979201:1979201197920119805471347Marinitoga piezophila KA3 chromosome, complete genomedipeptidase2e-0757
NC_014831:2133060:2153927215392721553001374Thermaerobacter marianensis DSM 12885 chromosome, complete genomepeptidase M203e-0756.6
NC_007760:645016:6607006607006618151116Anaeromyxobacter dehalogenans 2CP-C, complete genomeacetylornithine deacetylase (ArgE)3e-0756.6
NC_014831:329983:3475213475213488761356Thermaerobacter marianensis DSM 12885 chromosome, complete genomepeptidase M203e-0756.6
NC_013517:3846747:3849344384934438505971254Sebaldella termitidis ATCC 33386, complete genomeacetylornithine deacetylase or succinyl- diaminopimelate desuccinylase3e-0756.2
NC_011740:2859933:2882065288206528834021338Escherichia fergusonii ATCC 35469, complete genomeputative peptidic bond hydrolase6e-0755.5
NC_015177:2271499:2273139227313922745841446Pedobacter saltans DSM 12145 chromosome, complete genomepeptidase M207e-0755.5
NC_009954:117895:1380351380351392761242Caldivirga maquilingensis IC-167, complete genomeacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase7e-0755.5
NC_015385:965341:9698619698619710901230Treponema succinifaciens DSM 2489 chromosome, complete genomeacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase7e-0755.5
NC_014364:111000:1176511176511188651215Spirochaeta smaragdinae DSM 11293 chromosome, complete genomepeptidase M201e-0654.7
NC_014299:218252:2356422356422369791338Halalkalicoccus jeotgali B3 plasmid 2, complete sequenceacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase2e-0654.3
NC_014299:82584:1087331087331100821350Halalkalicoccus jeotgali B3 plasmid 2, complete sequencedeacylase2e-0654.3
NC_005773:5684000:5707645570764557088021158Pseudomonas syringae pv. phaseolicola 1448A, complete genomeacetylornithine deacetylase (ArgE)2e-0653.9
NC_020409:560278:5602785602785614981221Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeputative enzyme2e-0653.9
NC_003911:3864852:3885158388515838863031146Silicibacter pomeroyi DSS-3, complete genomeacetylornithine deacetylase2e-0653.5
NC_010407:1114408:1134498113449811357361239Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative hydrolase2e-0653.5
NC_000961:1481685:150747815074781508455978Pyrococcus horikoshii OT3, complete genomeacetyl-lysine deacetylase3e-0653.1
NC_008269:428898:4333954333954347021308Rhodococcus sp. RHA1 plasmid pRHL1, complete sequenceprobable acetylornithine deacetylase4e-0652.8
NC_015474:252390:280592280592281572981Pyrococcus sp. NA2 chromosome, complete genomeacetyl-lysine deacetylase6e-0652.4
NC_012590:37697:6568265682670971416Corynebacterium aurimucosum ATCC 700975, complete genomeputative peptidase7e-0652
NC_016512:679688:6923386923386934171080Propionibacterium acnes TypeIA2 P.acn17 chromosome, completesuccinyl-diaminopimelate desuccinylase8e-0652
NC_016511:678582:6929536929536940321080Propionibacterium acnes TypeIA2 P.acn31 chromosome, completesuccinyl-diaminopimelate desuccinylase8e-0652
NC_014039:708427:7196597196597207381080Propionibacterium acnes SK137 chromosome, complete genomesuccinyl-diaminopimelate desuccinylase8e-0652