Pre_GI Gene

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Host: NC_010407 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010407:1114408 Clavibacter michiganensis subsp. sepedonicus chromosome, complete

Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Causative agent of bacterial ring rot. Isolated from infected potato. This organism was first described and classified in 1914 as "Bacterium sepedonicus" and is considered a major plant pathogen. It is a phytopathogenic actinomycete that causes wilt and tuber rot in potato, which is a plant vascular disease with very high bacterial titers. Pathogenicity is believed to be associated with the presence of two plasmids, pCSL1 and pCSL2. This species is subdivided into five subspecies: michiganensis, sepedonicus, nebraskensis, tesselarius and insidiosus each of which infects specific hosts: tomato, potato, corn, wheat and alfalfa, respectively. Members of the Clavibacter genus are known to produce antimicrobial compounds.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
11140011114423423
111440811185654158FtskSpoIIIE family proteinQuickGO ontologyBLASTP
11185621119455894hypothetical protein
111945811207681311putative integral membrane proteinQuickGO ontologyBLASTP
11207651121022258hypothetical protein
112101211221691158hypothetical protein
11223571122698342hypothetical proteinBLASTP
11227171123031315hypothetical proteinBLASTP
112303711240591023hypothetical protein
11240561124445390hypothetical protein
11244261124794369hypothetical protein
112482711271092283hypothetical proteinBLASTP
11271661127567402hypothetical proteinBLASTP
1127659112772466hypothetical protein
11277551127868114hypothetical protein
11279521128092141hypothetical protein
11281941128499306hypothetical proteinBLASTP
11285551128755201hypothetical protein
112879011302381449putative oxidoreductaseQuickGO ontologyBLASTP
11302481131246999short chain dehydrogenaseQuickGO ontologyBLASTP
113134511330871743long-chain-fatty-acid--CoA ligaseQuickGO ontologyBLASTP
11330981134057960putative oxidoreductaseQuickGO ontologyBLASTP
11341541134501348hypothetical protein
113449811357361239putative hydrolaseQuickGO ontologyBLASTP
11358331136795963putative insertion element ISCmi2 transposaseQuickGO ontologyBLASTP
113685311389462094putative dipeptidyl-peptidaseQuickGO ontologyBLASTP