Pre_GI: BLASTP Hits

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Query: NC_009439:2337024:2338212 Pseudomonas mendocina ymp, complete genome

Start: 2338212, End: 2338301, Length: 90

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015410:2838132:28601222860122286020887Pseudomonas mendocina NK-01 chromosome, complete genometRNA-Ser6e-0856.2
NC_004129:2034500:20420892042089204217890Pseudomonas fluorescens Pf-5, complete genometRNA-Ser6e-0856.2
NC_014500:3023762:30311823031182303127190Dickeya dadantii 3937 chromosome, complete genometRNA-Ser7e-0855.8
NC_013592:1730505:17543831754383175447290Dickeya dadantii Ech586, complete genometRNA-Ser2e-0754.7
NC_012912:1788308:18170891817089181717890Dickeya zeae Ech1591, complete genometRNA-Ser2e-0754.7
NC_016830:4809210:48237234823723482380987Pseudomonas fluorescens F113 chromosome, complete genometRNA-Ser5e-0753.1
NC_007005:2149275:21619072161907216199690Pseudomonas syringae pv. syringae B728a, complete genometRNA-Ser6e-0752.8
NC_013421:3117639:31257093125709312579890Pectobacterium wasabiae WPP163, complete genometRNA-Ser8e-0752.4
NC_012917:2921932:29259772925977292606690Pectobacterium carotovorum subsp. carotovorum PC1, complete genometRNA-Ser8e-0752.4
NC_004547:1970686:19891321989132198922190Erwinia carotovora subsp. atroseptica SCRI1043, complete genometRNA-Ser8e-0752.4
NC_017047:1796000:17966461796646179673590Rahnella aquatilis HX2 chromosome, complete genometRNA-Ser1e-0651.6
NC_017047:1796000:17960761796076179616590Rahnella aquatilis HX2 chromosome, complete genometRNA-Ser1e-0651.6
NC_015703:3842144:38572773857277385736690Runella slithyformis DSM 19594 chromosome, complete genometRNA-Ser2e-0651.2
NC_012660:5121219:51349375134937513502387Pseudomonas fluorescens SBW25 chromosome, complete genometRNA-Ser2e-0651.2
NC_010465:2383219:24039662403966240405590Yersinia pseudotuberculosis YPIII, complete genometRNA-Ser3e-0650.4
NC_009381:1205900:12266101226610122669990Yersinia pestis Pestoides F chromosome, complete genometRNA-Ser3e-0650.4
NC_014029:2285323:23060852306085230617490Yersinia pestis Z176003 chromosome, complete genometRNA-Ser3e-0650.4
NC_017160:2212806:22335852233585223367490Yersinia pestis D182038 chromosome, complete genometRNA-Ser3e-0650.4
NC_017168:3433804:34543933454393345448290Yersinia pestis A1122 chromosome, complete genometRNA-Ser3e-0650.4
NC_017265:2213500:22337612233761223385090Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,tRNA-Ser3e-0650.4
NC_005296:5238882:52523305252330525241990Rhodopseudomonas palustris CGA009, complete genometRNA-Ser4e-0650.1
NC_009667:1371924:13888021388802138889190Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequencetRNA-Ser4e-0650.1
NC_011004:5520771:55342175534217553430690Rhodopseudomonas palustris TIE-1, complete genometRNA-Ser4e-0650.1
NC_014217:4597426:46118994611899461198890Starkeya novella DSM 506 chromosome, complete genometRNA-Ser6e-0649.7
NC_016513:1761830:17796441779644177973390Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completetRNA-Ser9e-0648.9
NC_013416:1429881:14453631445363144545290Aggregatibacter actinomycetemcomitans D11S-1, complete genometRNA-Ser9e-0648.9