Pre_GI: BLASTP Hits

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Query: NC_008261:1787345:1789859 Clostridium perfringens ATCC 13124, complete genome

Start: 1789859, End: 1791739, Length: 1881

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018870:2316499:2317535231753523185451011Thermacetogenium phaeum DSM 12270 chromosome, complete genomebeta-lactamase-like protein3e-1274.3
NC_015555:863173:879509879509880426918Thermoanaerobacterium xylanolyticum LX-11 chromosome, completebeta-lactamase domain protein1e-0862
NC_007644:1293701:1297449129744912984951047Moorella thermoacetica ATCC 39073, complete genomeBeta-lactamase-like1e-0862
NC_008593:2020473:2040892204089220422081317Clostridium novyi NT, complete genomeMetallo-beta-lactamase superfamily protein2e-0861.2
NC_014220:1732254:1732254173225417346382385Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomeDNA internalization-related competence protein ComEC/Rec26e-0860.1
NC_015425:2277570:2294149229414922953271179Clostridium botulinum BKT015925 chromosome, complete genomemetallo-beta-lactamase superfamily protein1e-0758.5
NC_009699:490652:505688505688506551864Clostridium botulinum F str. Langeland chromosome, complete genomemetallo-beta-lactamase family protein4e-0757.4
NC_017297:490922:505958505958506821864Clostridium botulinum F str. 230613 chromosome, complete genomemetallo-beta-lactamase family protein4e-0757.4
NC_010516:514000:525978525978526841864Clostridium botulinum B1 str. Okra, complete genomemetallo-beta-lactamase family protein3e-0757.4
NC_010520:496500:508756508756509619864Clostridium botulinum A3 str. Loch Maree, complete genomemetallo-beta-lactamase family protein4e-0757
NC_009495:482500:494523494523495386864Clostridium botulinum A str. ATCC 3502 chromosome, complete genomemetallo beta-lactamase superfamily lipoprotein5e-0757
NC_011837:950000:975137975137976012876Clostridium kluyveri NBRC 12016, complete genomehypothetical protein5e-0756.6
NC_015573:893862:9200839200839212731191Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehypothetical protein1e-0655.8
NC_009697:444801:459298459298460161864Clostridium botulinum A str. ATCC 19397 chromosome, completemetallo-beta-lactamase family protein1e-0655.8
NC_009698:467500:479686479686480549864Clostridium botulinum A str. Hall chromosome, complete genomemetallo-beta-lactamase1e-0655.8
NC_012563:519037:533717533717534580864Clostridium botulinum A2 str. Kyoto, complete genomemetallo-beta-lactamase family protein8e-0755.8
NC_014328:711842:724612724612725472861Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative ComE-like protein1e-0655.5
NC_019970:1991944:199194419919441992897954Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeputative hydrolase (metallo-beta-lactamase superfamily)2e-0655.1
NC_014721:2135500:2151860215186021529211062Caldicellulosiruptor kristjanssonii 177R1B chromosome, completehypothetical protein3e-0654.3
NC_009617:5489933:5500218550021855023202103Clostridium beijerinckii NCIMB 8052 chromosome, complete genomecell wall binding repeat-containing protein3e-0653.9
NC_012658:482313:496519496519497382864Clostridium botulinum Ba4 str. 657 chromosome, complete genomemetallo-beta-lactamase family protein3e-0653.9
NC_015425:1295261:1327851132785113291431293Clostridium botulinum BKT015925 chromosome, complete genomemetallo beta-lactamase superfamily hydrolase4e-0653.5
NC_010674:3362071:3375251337525133774522202Clostridium botulinum B str. Eklund 17B, complete genomecollagenolytic protease5e-0653.5
NC_009617:5489933:5506727550672755081481422Clostridium beijerinckii NCIMB 8052 chromosome, complete genomecell wall binding repeat-containing protein7e-0653.1
NC_010674:3362071:3364202336420233656351434Clostridium botulinum B str. Eklund 17B, complete genomesurface protein PspC7e-0652.8
NC_015425:2024154:202906720290672029936870Clostridium botulinum BKT015925 chromosome, complete genomecomE-like protein, metallo beta-lactamase superfamily hydrolase7e-0652.8