Pre_GI: BLASTP Hits

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Query: NC_008258:2905413:2908014 Shigella flexneri 5 str. 8401, complete genome

Start: 2908014, End: 2910266, Length: 2253

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:2785309:2797883279788328001352253Shigella flexneri 2002017 chromosome, complete genomealpha amylase01518
NC_004337:2747917:2759001275900127612532253Shigella flexneri 2a str. 301, complete genome01516
NC_009800:2788164:2803842280384228060942253Escherichia coli HS, complete genomealpha amylase family protein01473
NC_010498:2847359:2860012286001228622642253Escherichia coli SMS-3-5, complete genomealpha amylase family protein01472
NC_011750:2928990:2952498295249829547502253Escherichia coli IAI39 chromosome, complete genomeputative alpha-amylase01469
NC_013941:3300000:3346327334632733485792253Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein01466
NC_010473:2839902:2876184287618428784362253Escherichia coli str. K-12 substr. DH10B, complete genome01454
NC_011751:3048490:3089751308975130920032253Escherichia coli UMN026 chromosome, complete genomeputative Alpha-amylase01454
NC_010468:1130000:1135932113593211377731842Escherichia coli ATCC 8739, complete genomealpha amylase catalytic region01201
NC_011741:2818750:2831233283123328330741842Escherichia coli IAI1 chromosome, complete genomeputative alpha-amylase01200
NC_009801:2898426:2946921294692129487621842Escherichia coli E24377A, complete genomealpha amylase domain protein01200
CU928160:2818750:2831233283123328330741842Escherichia coli IAI1 chromosome, complete genomeputative Alpha-amylase01200
NC_011748:2973968:2997012299701229986581647Escherichia coli 55989, complete genome01095
CU928145:2973968:2997012299701229986581647Escherichia coli 55989 chromosome, complete genomefragment of putative Alpha-amylase (part 1)01095
NC_007384:2933625:2946772294677229483251554Shigella sonnei Ss046, complete genomeputative enzyme01018
NC_011353:3573641:3612819361281936140571239Escherichia coli O157:H7 str. EC4115 chromosome, complete genome0831
NC_002655:3538656:3575873357587335771111239Escherichia coli O157:H7 EDL933, complete genomehypothetical protein0831
NC_002695:3468873:3508583350858335098211239Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein0831
NC_016902:1165726:1171092117109211721351044Escherichia coli KO11FL chromosome, complete genomealpha amylase0660
CP002516:1165726:1171092117109211721351044Escherichia coli KO11, complete genomealpha amylase all-beta0660
CP002185:2919752:2933758293375829347651008Escherichia coli W, complete genome0635
NC_011353:3573641:3614064361406436150711008Escherichia coli O157:H7 str. EC4115 chromosome, complete genome2e-173609
NC_002695:3468873:3509828350982835108351008Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-173609
NC_002655:3538656:3577118357711835781251008Escherichia coli O157:H7 EDL933, complete genomeputative enzyme2e-173609
NC_013353:3238742:3250167325016732511741008Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein2e-171603
AP010958:3238742:3250167325016732511741008Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein2e-171603
AC_000091:2747520:278540427854042786090687Escherichia coli W3110 DNA, complete genomehypothetical protein3e-130466
NC_000913:2746886:278477027847702785456687Escherichia coli K12, complete genomehypothetical protein3e-130466
NC_004741:2741971:275484627548462755478633Shigella flexneri 2a str. 2457T, complete genome5e-109395
NC_011415:3006794:302162330216233022255633Escherichia coli SE11 chromosome, complete genomehypothetical protein4e-106386
NC_013364:3339768:335118333511833351779597Escherichia coli O111:H- str. 11128, complete genome3e-99363
NC_013361:3651150:366600936660093666605597Escherichia coli O26:H11 str. 11368 chromosome, complete genome3e-99363
AC_000091:2747520:278629827862982786894597Escherichia coli W3110 DNA, complete genome3e-99363
NC_000913:2746886:278566427856642786260597Escherichia coli K12, complete genomeconserved protein (pseudogene)3e-99363
NC_004741:2741971:275398827539882754437450Shigella flexneri 2a str. 2457T, complete genome4e-84313
NC_004741:2741971:275363727536372753969333Shigella flexneri 2a str. 2457T, complete genome2e-57224
NC_000913:2746886:278441927844192784751333Escherichia coli K12, complete genomehypothetical protein5e-54213
AC_000091:2747520:278505327850532785385333Escherichia coli W3110 DNA, complete genomehypothetical protein5e-54213
NC_004741:2741971:275561727556172755889273Shigella flexneri 2a str. 2457T, complete genomehypothetical protein8e-46186
NC_011415:3006794:302239430223943022666273Escherichia coli SE11 chromosome, complete genomehypothetical protein1e-43178
NC_011748:2973968:299899329989932999265273Escherichia coli 55989, complete genomehypothetical protein3e-43177
CU928160:2818750:283321328332132833485273Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein3e-43177
NC_000913:2746886:278639927863992786671273Escherichia coli K12, complete genomehypothetical protein3e-43177
CU928145:2973968:299899329989932999265273Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein3e-43177
AC_000091:2747520:278703327870332787305273Escherichia coli W3110 DNA, complete genomehypothetical protein3e-43177
NC_011741:2818750:283321328332132833485273Escherichia coli IAI1 chromosome, complete genomehypothetical protein3e-43177
NC_013364:3339768:335191833519183352190273Escherichia coli O111:H- str. 11128, complete genome3e-43177
NC_016822:3065426:308013330801333080405273Shigella sonnei 53G, complete genomealpha amylase3e-43177
NC_004741:2741971:275448627544862754674189Shigella flexneri 2a str. 2457T, complete genome2e-28127
NC_011601:2998326:301416130141613014541381Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein3e-21104
CU928145:2973968:299873229987322998854123Escherichia coli 55989 chromosome, complete genomefragment of putative Alpha-amylase (part 2)5e-1687
NC_011748:2973968:299873229987322998854123Escherichia coli 55989, complete genome5e-1687
NC_014973:4503054:4514193451419345155121320Geobacter sp. M18 chromosome, complete genomealpha amylase catalytic subunit6e-1686.7