Pre_GI: BLASTP Hits

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Query: NC_008258:1784637:1803660 Shigella flexneri 5 str. 8401, complete genome

Start: 1803660, End: 1804325, Length: 666

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:1835108:185687918568791857601723Shigella flexneri 2002017 chromosome, complete genomeputative HTH-type transcriptional regulator yncC2e-118424
NC_004337:1783645:180433618043361805058723Shigella flexneri 2a str. 301, complete genomehypothetical protein2e-118424
NC_012759:1409086:141034514103451411010666Escherichia coli BW2952 chromosome, complete genomeputative DNA-binding transcriptional regulator4e-112403
NC_000913:1517051:151828615182861518951666Escherichia coli K12, complete genomepredicted DNA-binding transcriptional regulator4e-112403
NC_010473:1607646:160888116088811609546666Escherichia coli str. K-12 substr. DH10B, complete genomepredicted DNA-binding transcriptional regulator4e-112403
AC_000091:1521976:152197615219761522641666Escherichia coli W3110 DNA, complete genomepredicted DNA-binding transcriptional regulator4e-112403
NC_010501:1868888:189460218946021895321720Pseudomonas putida W619, complete genometranscriptional regulator, GntR family4e-22104
NC_009720:464078:469078469078469827750Xanthobacter autotrophicus Py2, complete genomeGntR family transcriptional regulator4e-21101
NC_020453:1025891:103670110367011037402702Agromonas oligotrophica S58 DNA, complete genomeAtrA transcriptional regulator1e-1996.7
NC_008254:2496622:250986125098612510598738Mesorhizobium sp. BNC1, complete genometranscriptional regulator, GntR family2e-1995.9
NC_011894:5787990:578847757884775789181705Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, GntR family1e-1789.7
NC_011745:1581907:158331415833141583550237Escherichia coli ED1a chromosome, complete genomehypothetical protein4e-1788.2
NC_014640:5897421:590216059021605902852693Achromobacter xylosoxidans A8 chromosome, complete genomeGntR family transcriptional regulator1e-1686.7
NC_011742:1528668:153214315321431532379237Escherichia coli S88 chromosome, complete genome1e-1686.3
NC_007946:1586656:159013115901311590367237Escherichia coli UTI89, complete genomehypothetical protein1e-1686.3
NC_013524:392089:401901401901402647747Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genometranscriptional regulator, GntR family4e-1374.7
NC_015977:2565922:256592225659222566599678Roseburia hominis A2-183 chromosome, complete genomeGntR domain containing protein6e-1374.3
NC_013939:1625491:163746116374611638132672Deferribacter desulfuricans SSM1, complete genomeGntR family transcriptional regulator1e-1273.2
NC_013947:5546315:554851655485165549172657Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, GntR family2e-1272.8
UCMB5137:3660165:368860236886023689270669Bacillus atrophaeus UCMB-5137putative transcriptional regulator6e-1270.9
NC_014815:4621552:465611546561154656822708Micromonospora sp. L5 chromosome, complete genometranscriptional regulator, gntr family1e-1169.7
NC_008596:4104476:412930241293024129928627Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulator, GntR family protein1e-1169.7
NC_013947:1696671:171062117106211711286666Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, GntR family2e-1168.9
NC_007953:314872:320623320623321315693Burkholderia xenovorans LB400 chromosome 3, complete sequenceTranscriptional regulator, GntR family2e-1066.2
NC_018681:2447871:245134424513442451982639Nocardia brasiliensis ATCC 700358 chromosome, complete genomeGntR family transcriptional regulator3e-1065.5
NC_020291:4033000:404904640490464049720675Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometranscriptional regulator, GntR family3e-1065.5
NC_014831:2082304:210025021002502100963714Thermaerobacter marianensis DSM 12885 chromosome, complete genometranscriptional regulator, GntR family2e-1065.5
NC_010505:3376322:339823433982343399088855Methylobacterium radiotolerans JCM 2831, complete genometranscriptional regulator, GntR family4e-1065.1
NC_009922:315870:338735338735339421687Alkaliphilus oremlandii OhILAs, complete genometranscriptional regulator, GntR family5e-1064.7
NC_011830:2177187:220439422043942205059666Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, GntR family6e-1064.3
NC_018515:937994:937994937994938674681Desulfosporosinus meridiei DSM 13257 chromosome, complete genometranscriptional regulator5e-1064.3
NC_013739:2106662:212626421262642127019756Conexibacter woesei DSM 14684, complete genometranscriptional regulator, GntR family5e-1064.3
NC_008148:2231045:227183422718342272532699Rubrobacter xylanophilus DSM 9941, complete genometranscriptional regulator, GntR family1e-0963.2
NC_006582:883922:909551909551910216666Bacillus clausii KSM-K16, complete genometranscriptional regulator, GntR family2e-0962.4
NC_016906:3286384:328959032895903290342753Gordonia polyisoprenivorans VH2 chromosome, complete genomeputative GntR family transcriptional regulator3e-0961.6
NC_016906:4123000:412848441284844129173690Gordonia polyisoprenivorans VH2 chromosome, complete genomeputative GntR family transcriptional regulator5e-0961.2
NC_007948:3502843:352215035221503522902753Polaromonas sp. JS666, complete genometranscriptional regulator, GntR family6e-0960.8
NC_015145:3657103:367579336757933676560768Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genometranscriptional regulator9e-0960.5
NC_008148:1859888:190316519031651903911747Rubrobacter xylanophilus DSM 9941, complete genometranscriptional regulator, GntR family1e-0860.1
NC_013729:4835452:485750648575064858159654Kribbella flavida DSM 17836, complete genometranscriptional regulator, GntR family1e-0859.7
NC_017191:3901914:390191439019143902573660Bacillus amyloliquefaciens XH7 chromosome, complete genometranscriptional regulator2e-0859.3
NC_014840:205723:266022266022266699678Pantoea sp. At-9b plasmid pPAT9B03, complete sequencetranscriptional regulator, GntR family3e-0858.9
NC_016894:3329562:333153633315363332213678Acetobacterium woodii DSM 1030 chromosome, complete genomeGntR family transcriptional regulator3e-0858.9
NC_020272:20435:418114181142473663Bacillus amyloliquefaciens IT-45, complete genomeputative HTH-type transcriptional regulator YdhC3e-0858.5
NC_010511:7553703:755681175568117557539729Methylobacterium sp. 4-46 chromosome, complete genomeGntR family transcriptional regulator4e-0858.2
NC_011831:1336779:134177413417741342454681Chloroflexus aggregans DSM 9485, complete genomeregulatory protein GntR HTH4e-0858.2
NC_020210:1908000:192856519285651929263699Geobacillus sp. GHH01, complete genomeHTH-type transcriptional regulator6e-0857.8
NC_014206:1745203:174693817469381747636699Geobacillus sp. C56-T3 chromosome, complete genomeGntR family transcriptional regulator6e-0857.8
NC_013411:2739989:274439727443972745095699Geobacillus sp. Y412MC61, complete genometranscriptional regulator, GntR family6e-0857.8
NC_014915:1880748:188433518843351885033699Geobacillus sp. Y412MC52 chromosome, complete genometranscriptional regulator, GntR family6e-0857.8
NC_008595:5168941:517071151707115171400690Mycobacterium avium 104, complete genometranscriptional regulator, GntR family protein6e-0857.8
NC_013939:1625491:163812216381221638790669Deferribacter desulfuricans SSM1, complete genomeGntR family transcriptional regulator5e-0857.8
NC_008699:1247423:124742312474231248148726Nocardioides sp. JS614, complete genomeGntR domain protein7e-0857.4
NC_011961:891815:896992896992897783792Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequencetranscriptional regulater GntR family protein9e-0857
NC_008686:1383891:140152714015271402195669Paracoccus denitrificans PD1222 chromosome 1, complete sequencetranscriptional regulator, GntR family9e-0857
NC_014206:2971304:298470229847022985352651Geobacillus sp. C56-T3 chromosome, complete genomeGntR family transcriptional regulator1e-0757
NC_004557:2607073:262244126224412623106666Clostridium tetani E88, complete genometranscriptional regulator, gntR family2e-0755.8
NC_020272:3396800:342166934216693422334666Bacillus amyloliquefaciens IT-45, complete genomeFatty acid metabolism regulator protein2e-0755.8
NC_015957:5082172:509492150949215095619699Streptomyces violaceusniger Tu 4113 chromosome, complete genomeGntR family transcriptional regulator2e-0755.8
NC_011894:6485500:649703764970376497684648Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, GntR family3e-0755.1
NC_009328:1867971:186797118679711868669699Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeregulatory protein3e-0755.1
NC_016593:762216:786841786841787500660Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completetranscriptional regulator, GntR4e-0755.1
NC_020210:661236:668499668499669158660Geobacillus sp. GHH01, complete genomeHTH-type transcriptional regulator4e-0754.7
NC_014210:5683616:569274356927435693420678Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, GntR family4e-0754.7
NC_014364:815346:860465860465861166702Spirochaeta smaragdinae DSM 11293 chromosome, complete genometranscriptional regulator, GntR family7e-0754.3
NC_013592:3263005:328412532841253284826702Dickeya dadantii Ech586, complete genometranscriptional regulator, GntR family7e-0754.3
NC_013850:2624899:262654026265402627256717Klebsiella variicola At-22 chromosome, complete genometranscriptional regulator, GntR family7e-0754.3
NC_018691:2810949:281205628120562812796741Alcanivorax dieselolei B5 chromosome, complete genomeGntR family transcriptional regulator6e-0754.3
NC_013173:2261396:227212122721212272783663Desulfomicrobium baculatum DSM 4028, complete genometranscriptional regulator, GntR family6e-0754.3
NC_009664:4423829:451763545176354518357723Kineococcus radiotolerans SRS30216, complete genometranscriptional regulator, GntR family6e-0754.3
NC_010002:3357752:335915233591523359841690Delftia acidovorans SPH-1, complete genometranscriptional regulator, GntR family6e-0754.3
NC_006582:4256915:425897342589734259593621Bacillus clausii KSM-K16, complete genometranscriptional regulator, GntR family8e-0753.9
NC_004463:1369165:139094013909401391659720Bradyrhizobium japonicum USDA 110, complete genometranscriptional regulatory protein8e-0753.9
NC_008543:323773:326602326602327249648Burkholderia cenocepacia HI2424 chromosome 2, complete sequencetranscriptional regulator, GntR family1e-0653.5
NC_020911:3076791:308053030805303081186657Octadecabacter antarcticus 307, complete genomeGntR family transcriptional regulator1e-0653.1
NC_012587:3177583:317681031768103177586777Rhizobium sp. NGR234, complete genomeputative transcriptional regulator, GntR family1e-0653.1
NC_010002:3357752:337233533723353373021687Delftia acidovorans SPH-1, complete genometranscriptional regulator, GntR family2e-0652.8
NC_010501:4080937:408689040868904087633744Pseudomonas putida W619, complete genometranscriptional regulator, GntR family2e-0652.8
NC_009648:1956070:197127419712741971990717Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genometranscriptional regulator2e-0652.8
NC_013520:1905554:191069019106901911397708Veillonella parvula DSM 2008, complete genometranscriptional regulator, GntR family2e-0652.8
NC_011892:352652:367122367122367793672Methylobacterium nodulans ORS 2060 plasmid pMNOD01, completetranscriptional regulator, GntR family3e-0652.4
NC_012108:3824977:383239938323993833073675Desulfobacterium autotrophicum HRM2, complete genometranscriptional regulator (GntR family protein)2e-0652.4
NC_011283:2627050:262869126286912629407717Klebsiella pneumoniae 342 chromosome, complete genomeGntR family transcriptional regulator2e-0652.4
NC_014334:37040:521305213052822693Lactobacillus casei str. Zhang chromosome, complete genometranscriptional regulator3e-0652
NC_013526:439813:465389465389466147759Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genometranscriptional regulator, GntR family3e-0652
NC_014011:472650:487302487302487922621Aminobacterium colombiense DSM 12261 chromosome, complete genometranscriptional regulator, GntR family3e-0652
NC_016845:2729654:274703827470382747754717Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,GntR family transcriptional regulator3e-0652
NC_008260:125500:129582129582130286705Alcanivorax borkumensis SK2, complete genometranscriptional regulator, GntR family4e-0651.6
NC_002947:4931476:493700649370064937698693Pseudomonas putida KT2440, complete genometranscriptional regulator, GntR family4e-0651.6
NC_007348:752692:758795758795759571777Ralstonia eutropha JMP134 chromosome 2, complete sequenceregulatory protein GntR, HTH:GntR, C-terminal4e-0651.6
NC_015727:1076927:109922410992241099961738Cupriavidus necator N-1 plasmid BB1p, complete sequenceGntR family transcriptional regulator4e-0651.6
NC_011961:304158:330806330806331549744Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequenceGntR family transcriptional regulator6e-0651.2
NC_012522:3038890:304323930432393043943705Rhodococcus opacus B4, complete genomeputative GntR family transcriptional regulator6e-0651.2
NC_014098:1258559:126150612615061262153648Bacillus tusciae DSM 2912 chromosome, complete genometranscriptional regulator, GntR family6e-0651.2
NC_015458:1692401:169240116924011693138738Pusillimonas sp. T7-7 chromosome, complete genomeGntR family transcriptional regulator5e-0651.2
NC_012731:2693091:270489427048942705610717Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical transcriptional regulator7e-0650.8
NC_008391:1210451:123699212369921237723732Burkholderia cepacia AMMD chromosome 2, complete sequencetranscriptional regulator, GntR family9e-0650.4
NC_016582:9664000:967760596776059678303699Streptomyces bingchenggensis BCW-1 chromosome, complete genomeGntR family transcriptional regulator9e-0650.4
NC_014931:3642779:365811536581153658783669Variovorax paradoxus EPS chromosome, complete genometranscriptional regulator, GntR family9e-0650.4