Pre_GI: BLASTP Hits

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Query: NC_008146:3349415:3354445 Mycobacterium sp. MCS, complete genome

Start: 3354445, End: 3355779, Length: 1335

Host Lineage: Mycobacterium; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Mycobacterium MCS was isolated from soil in a wood preservative-contaminated land-treatment unit where remediation of polycyclic aromatic hydrocarbon (PAH) was occurring. This isolate mineralizes small- and large-ring PAHs, in contrast to other PAH-degrading microbes. Bioremediation of PAHs offers an attractive solution to pollution clean-up because it can occur on site and at relative little cost compared to alternatives. This isolate belongs to a fast-growing group of the mycobacterium genus that is defined as Gram-positive, acid-fast, pleomorphic, non-motile rods. Bioremediation of soils contaminated with wood preservatives containing polycyclic aromatic hydrocarbons (PAHs) is desired because of their toxic, mutagenic, and carcinogenic properties. Creosote wood preservative–contaminated soils at the Champion International Superfund Site in Libby, Montana currently undergo bioremediation in a prepared-bed land treatment unit (LTU) process.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008705:3377697:3382727338272733840611335Mycobacterium sp. KMS, complete genomepeptidase M200903
NC_009077:3323291:3328321332832133296551335Mycobacterium sp. JLS, complete genomepeptidase M200900
NC_009142:2480608:2485190248519024865451356Saccharopolyspora erythraea NRRL 2338, complete genomeArgE/DapE/Acy1/Cpg2/yscS family4e-168591
NC_017955:2494640:2531004253100425323321329Modestobacter marinus, complete genomepeptidase M201e-138493
NC_016109:7445603:7461445746144574627611317Kitasatospora setae KM-6054, complete genomeputative peptidase M20 family protein6e-138491
NC_016582:10015558:1003178310031783100331201338Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein5e-138491
NC_016111:5515462:5525115552511555264401326Streptomyces cattleya NRRL 8057, complete genomehypothetical protein5e-138491
NC_013174:1254874:1270234127023412715531320Jonesia denitrificans DSM 20603, complete genomepeptidase M201e-116420
NC_013169:1410384:1432724143272414340371314Kytococcus sedentarius DSM 20547, complete genomeacetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase2e-113409
NC_013159:2098500:2126157212615721274611305Saccharomonospora viridis DSM 43017, complete genomeacetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase2e-106386
NC_009092:1127000:1131481113148111330071527Shewanella loihica PV-4, complete genomepeptidase M205e-33142
NC_015177:2271499:2273139227313922745841446Pedobacter saltans DSM 12145 chromosome, complete genomepeptidase M207e-32138
NC_012590:37697:6568265682670971416Corynebacterium aurimucosum ATCC 700975, complete genomeputative peptidase2e-27124
NC_015152:3100312:3100312310031231017451434Spirochaeta sp. Buddy chromosome, complete genomeGly-Xaa carboxypeptidase7e-27122
NC_009051:1455183:1455183145518314563491167Methanoculleus marisnigri JR1, complete genomeacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase4e-25116
NC_016070:719791:7271507271507283941245Thermoproteus tenax Kra 1, complete genomesuccinyl-diaminopimelate desuccinylase4e-22106
NC_019791:638500:6584156584156596501236Caldisphaera lagunensis DSM 15908 chromosome, complete genomeacetylornithine deacetylase/succinyl-diaminopimelate desuccinylase5e-22105
NC_003296:556836:6081006081006096321533Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completehypothetical protein1e-21104
NC_009954:117895:1380351380351392761242Caldivirga maquilingensis IC-167, complete genomeacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase3e-20100
NC_007759:1571425:1595000159500015962531254Syntrophus aciditrophicus SB, complete genomesuccinyl-diaminopimelate desuccinylase5e-2099.4
NC_011978:699500:7183917183917195901200Thermotoga neapolitana DSM 4359, complete genomeSuccinyl-diaminopimelate desuccinylase7e-2099
NC_013850:2685835:2709863270986327110051143Klebsiella variicola At-22 chromosome, complete genomeacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase1e-1895.1
NC_016845:2691129:2693983269398326951251143Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative acetylornithine deacetylase3e-1893.6
NC_012731:2650603:2653466265346626546081143Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative acetylornithine deacetylase3e-1893.6
NC_009648:1914621:1917454191745419185961143Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative acetylornithine deacetylase3e-1893.6
NC_011283:2684046:2705067270506727062091143Klebsiella pneumoniae 342 chromosome, complete genomepeptidase, ArgE/DapE family8e-1892
NC_013887:1668913:1672227167222716734561230Methanocaldococcus sp. FS406-22 chromosome, complete genomeacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase1e-1791.3
NC_009634:759372:7629617629617642081248Methanococcus vannielii SB chromosome, complete genomediaminopimelate aminotransferase4e-1789.7
NC_015385:965341:9698619698619710901230Treponema succinifaciens DSM 2489 chromosome, complete genomeacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase9e-1788.6
NC_005791:1377736:1381339138133913825861248Methanococcus maripaludis S2, complete genomesuccinyl-diaminopimelate desuccinylase9e-1788.6
NC_000909:404961:4079534079534091851233Methanocaldococcus jannaschii DSM 2661, complete genomesuccinyl-diaminopimelate desuccinylase1e-1688.2
NC_015847:1462068:1465672146567214669191248Methanococcus maripaludis XI chromosome, complete genomediaminopimelate aminotransferase2e-1687.8
NC_009135:130159:1457431457431469901248Methanococcus maripaludis C5, complete genomeacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase2e-1687.4
NC_009975:1163918:1179496117949611807431248Methanococcus maripaludis C6, complete genomeacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase3e-1686.7
NC_009637:646092:6496956496956509421248Methanococcus maripaludis C7 chromosome, complete genomediaminopimelate aminotransferase7e-1685.5
NC_020409:560278:5602785602785614981221Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeputative enzyme1e-1584.7
NC_015562:899030:9196499196499209231275Methanotorris igneus Kol 5 chromosome, complete genomeacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase2e-1584.3
NC_013156:633475:6497946497946510231230Methanocaldococcus fervens AG86, complete genomeacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase1e-1481.3
NC_013741:1304000:1319234131923413204391206Archaeoglobus profundus DSM 5631, complete genomeacetylornithine deacetylase or succinyl- diaminopimelate desuccinylase2e-1480.5
NC_015518:179938:1982971982971995111215Acidianus hospitalis W1 chromosome, complete genomesuccinyl-diaminopimelate desuccinylase3e-1480.1
NC_018870:1695588:1724306172430617256371332Thermacetogenium phaeum DSM 12270 chromosome, complete genomepeptidase ArgE/DapE family6e-1375.9
NC_014222:1188719:1207870120787012092521383Methanococcus voltae A3 chromosome, complete genomeacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase1e-1274.7
NC_008321:2190000:2205418220541822065631146Shewanella sp. MR-4, complete genomesuccinyl-diaminopimelate desuccinylase2e-1273.9
NC_012791:2832001:2861987286198728631621176Variovorax paradoxus S110 chromosome 1, complete genomesuccinyl-diaminopimelate desuccinylase3e-1273.6
NC_012623:2004786:2018798201879820200091212Sulfolobus islandicus Y.N.15.51 chromosome, complete genomesuccinyl-diaminopimelate desuccinylase3e-1273.2
NC_012632:538967:5511565511565523671212Sulfolobus islandicus M.16.27 chromosome, complete genomesuccinyl-diaminopimelate desuccinylase3e-1273.2
NC_010407:1114408:1134498113449811357361239Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative hydrolase4e-1273.2
NC_011283:1811000:1875052187505218762121161Klebsiella pneumoniae 342 chromosome, complete genomeacetylornithine deacetylase7e-1272.4
NC_013093:915248:9308279308279322661440Actinosynnema mirum DSM 43827, complete genomepeptidase M203e-1170.5
NC_014323:3669704:3675217367521736764191203Herbaspirillum seropedicae SmR1 chromosome, complete genomeacetylornithine deacetylase2e-1170.5
NC_015311:1827000:1828714182871418301201407Prevotella denticola F0289 chromosome, complete genomepeptidase dimerization domain-containing protein5e-1169.7
NC_018643:857911:8887898887898899671179Alpha proteobacterium HIMB5 chromosome, complete genomeacetylornithine deacetylase ArgE7e-1168.9
NC_015496:2436089:2459273245927324603431071Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genomepeptidase M202e-1067.8
NC_019907:46994:5016650166513561191Liberibacter crescens BT-1 chromosome, complete genomeN-succinyl-L,L-diaminopimelate desuccinylase3e-1066.6
NC_014643:892138:8921388921388935171380Rothia dentocariosa ATCC 17931 chromosome, complete genomeacetylornithine deacetylase5e-1066.2
NC_010531:428000:4452004452004463511152Polynucleobacter necessarius STIR1, complete genomesuccinyl-diaminopimelate desuccinylase9e-1065.5
NC_012659:467893:4892804892804905601281Bacillus anthracis str. A0248, complete genomeacetylornithine deacetylase1e-0965.1
NC_003997:467993:4893804893804906601281Bacillus anthracis str. Ames, complete genomeacetylornithine deacetylase1e-0965.1
NC_005945:467427:4894234894234907031281Bacillus anthracis str. Sterne, complete genomeacetylornithine deacetylase1e-0965.1
NC_007530:467993:4893804893804906601281Bacillus anthracis str. 'Ames Ancestor', complete genomeacetylornithine deacetylase1e-0965.1
NC_008700:1994829:2012345201234520134931149Shewanella amazonensis SB2B, complete genomesuccinyl-diaminopimelate desuccinylase3e-0963.5
NC_020075:637420:6395976395976407511155Candidatus Blochmannia chromaiodes str. 640, complete genomesuccinyl-diaminopimelate desuccinylase4e-0963.2
NC_009655:866281:8668698668698679991131Actinobacillus succinogenes 130Z chromosome, complete genomesuccinyl-diaminopimelate desuccinylase4e-0963.2
NC_012527:288207:3034573034573045901134Deinococcus deserti VCD115 plasmid 1, complete sequenceacetylornithine deacetylase4e-0963.2
NC_014624:287500:2888932888932900411149Eubacterium limosum KIST612 chromosome, complete genomeputative succinyl-diaminopimelate desuccinylase4e-0963.2
NC_009328:293000:3276293276293288581230Geobacillus thermodenitrificans NG80-2 chromosome, complete genomehypothetical protein6e-0962.8
NC_010525:1314999:1315805131580513170041200Thermoproteus neutrophilus V24Sta, complete genomeacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase8e-0962
NC_013315:2232339:2245359224535922465461188Clostridium difficile CD196 chromosome, complete genomepeptidase8e-0962
NC_013316:2309694:2325913232591323271001188Clostridium difficile R20291, complete genomeputative amidohydrolase8e-0962
NC_008043:86470:8848288482896691188Silicibacter sp. TM1040 mega plasmid, complete sequencepeptidase M201e-0861.6
NC_014150:2399997:2408492240849224097601269Brachyspira murdochii DSM 12563 chromosome, complete genomeacetylornithine deacetylase or succinyl- diaminopimelate desuccinylase1e-0861.6
NC_013446:2655955:2679833267983326810141182Comamonas testosteroni CNB-2, complete genomesuccinyl-diaminopimelate desuccinylase1e-0861.2
NC_014933:3942156:3966643396664339679981356Bacteroides helcogenes P 36-108 chromosome, complete genomepeptidase M202e-0861.2
NC_005773:5684000:5707645570764557088021158Pseudomonas syringae pv. phaseolicola 1448A, complete genomeacetylornithine deacetylase (ArgE)2e-0860.8
NC_008314:477722:5175305175305187051176Ralstonia eutropha H16 chromosome 2, complete sequenceacetylornithine deacetylase2e-0860.5
NC_014761:1715377:1715377171537717164891113Oceanithermus profundus DSM 14977 chromosome, complete genomepeptidase m202e-0860.5
NC_014774:239865:2408272408272419241098Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, completesuccinyl-diaminopimelate desuccinylase4e-0859.7
NC_002516:1236644:1259291125929112604421152Pseudomonas aeruginosa PAO1, complete genomesuccinyl-diaminopimelate desuccinylase4e-0859.7
NC_016943:4799915:4800953480095348020411089Blastococcus saxobsidens DD2, complete genomeacetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase5e-0859.3
NC_011740:2859933:2882065288206528834021338Escherichia fergusonii ATCC 35469, complete genomeputative peptidic bond hydrolase5e-0859.3
NC_014761:516981:5203675203675214911125Oceanithermus profundus DSM 14977 chromosome, complete genomepeptidase m205e-0859.3
NC_007963:2644930:2676414267641426776221209Chromohalobacter salexigens DSM 3043, complete genomeacetylornithine deacetylase (ArgE)5e-0859.3
NC_020164:280087:2960722960722972921221Staphylococcus warneri SG1, complete genomesuccinyl-diaminopimelate desuccinylase8e-0858.9
NC_015761:2444833:2465547246554724666741128Salmonella bongori NCTC 12419, complete genomesuccinyl-diaminopimelate desuccinylase7e-0858.9
NC_007645:5397526:5403120540312054042711152Hahella chejuensis KCTC 2396, complete genomesuccinyl-diaminopimelate desuccinylase8e-0858.5
NC_002678:4859111:4865426486542648668861461Mesorhizobium loti MAFF303099, complete genomehypothetical protein1e-0758.5
NC_004461:205068:2059622059622071791218Staphylococcus epidermidis ATCC 12228, complete genomehypothetical protein1e-0758.2
NC_006300:600516:6280576280576291901134Mannheimia succiniciproducens MBEL55E, complete genomesuccinyl-diaminopimelate desuccinylase2e-0757.8
NC_014328:3294086:3302619330261933038031185Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative deacetylase2e-0757.8
NC_020054:1002906:1027692102769210290621371Fibrella aestuarina BUZ 2 drat genomepeptidase M202e-0757.4
NC_013961:2579000:2581127258112725822541128Erwinia amylovora, complete genomeN-succinyl-diaminopimelate deacylase2e-0757.4
NC_013971:2617000:2618655261865526197821128Erwinia amylovora ATCC 49946 chromosome, complete genomesuccinyl-diaminopimelate desuccinylase2e-0757.4
NC_010512:1196616:1212286121228612134491164Burkholderia cenocepacia MC0-3 chromosome 3, complete sequenceacetylornithine deacetylase (ArgE)3e-0756.6
NC_015563:5162177:5163949516394951652411293Delftia sp. Cs1-4 chromosome, complete genomepeptidase M205e-0756.2
NC_004545:96422:9858998589997221134Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genomesuccinyl-diaminopimelate desuccinylase5e-0756.2
NC_003911:3864852:3885158388515838863031146Silicibacter pomeroyi DSS-3, complete genomeacetylornithine deacetylase5e-0756.2
NC_013315:3532721:3547141354714135483281188Clostridium difficile CD196 chromosome, complete genomepeptidase9e-0755.5
NC_017179:3540739:3555159355515935563461188Clostridium difficile BI1, complete genomepeptidase9e-0755.5
NC_012985:465354:4804614804614816301170Candidatus Liberibacter asiaticus str. psy62, complete genomesuccinyl-diaminopimelate desuccinylase9e-0755.5
NC_010002:2293670:2312976231297623142681293Delftia acidovorans SPH-1, complete genomepeptidase dimerisation domain protein7e-0755.5
NC_014831:329983:3475213475213488761356Thermaerobacter marianensis DSM 12885 chromosome, complete genomepeptidase M207e-0755.5
NC_007493:1672163:1676870167687016782821413Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequencehypothetical protein1e-0655.1
NC_016070:719791:7225897225897237821194Thermoproteus tenax Kra 1, complete genomesuccinyl-diaminopimelate desuccinylase1e-0655.1
NC_014299:218252:2305292305292318331305Halalkalicoccus jeotgali B3 plasmid 2, complete sequenceacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase1e-0655.1
NC_010557:1030319:1031304103130410324761173Burkholderia ambifaria MC40-6 chromosome 3, complete sequenceacetylornithine deacetylase (ArgE)2e-0653.9
NC_009439:3394174:3393035339303533941771143Pseudomonas mendocina ymp, complete genomesuccinyl-diaminopimelate desuccinylase7e-0652.4
NC_014297:1:7895789591301236Halalkalicoccus jeotgali B3 chromosome, complete genomepeptidase M207e-0652.4
NC_014205:622627:6405366405366417681233Staphylothermus hellenicus DSM 12710 chromosome, complete genomeacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase6e-0652.4
NC_016830:6499234:6517382651738265185391158Pseudomonas fluorescens F113 chromosome, complete genomeprotein ArgE8e-0652
NC_009033:133800:1402961402961415341239Staphylothermus marinus F1, complete genomeacetylornithine deacetylase or succinyl-diaminopimelate desuccinylase8e-0652
NC_014831:2133060:2153927215392721553001374Thermaerobacter marianensis DSM 12885 chromosome, complete genomepeptidase M209e-0652