Pre_GI: BLASTP Hits

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Query: NC_004631:2366335:2370400 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 2370400, End: 2370606, Length: 207

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:598000:610495610495610701207Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-33140
NC_011147:2247460:225101122510112251182172Salmonella enterica subsp. enterica serovar Paratyphi A str3e-26117
NC_012125:600586:617634617634617963330Salmonella enterica subsp. enterica serovar Paratyphi C strainsensor kinase3e-1890.5
NC_011080:610428:622998622998623327330Salmonella enterica subsp. enterica serovar Newport str. SL254,3e-1890.5
NC_006905:651732:668790668790669119330Salmonella enterica subsp. enterica serovar Choleraesuis strSensor protein3e-1890.5
NC_011094:688626:701513701513701887375Salmonella enterica subsp. enterica serovar Schwarzengrund strsensor kinase CusS5e-1889.7
NC_011274:603901:616420616420616749330Salmonella enterica subsp. enterica serovar Gallinarum str. 287/916e-1889.4
NC_011294:585500:598048598048598377330Salmonella enterica subsp. enterica serovar Enteritidis str6e-1889.4
NC_016831:2402893:240602024060202406349330Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein6e-1889.4
NC_011205:645591:663584663584663913330Salmonella enterica subsp. enterica serovar Dublin str. CT_020218533e-1787
NC_011149:588895:601436601436601810375Salmonella enterica subsp. enterica serovar Agona str. SL483,sensor kinase CusS3e-1787
NC_010473:623810:6451436451436465851443Escherichia coli str. K-12 substr. DH10B, complete genomesensory histidine kinase in two-component regulatory system with CusR, senses copper ions8e-1785.9
NC_012759:461680:4953114953114967531443Escherichia coli BW2952 chromosome, complete genomesensor kinase CusS8e-1785.9
NC_003197:606048:618590618590618919330Salmonella typhimurium LT2, complete genomesensor kinase5e-1683.2
NC_011083:654479:667020667020667349330Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,5e-1683.2
NC_016810:604813:618078618078618407330Salmonella enterica subsp. enterica serovar Typhimurium str5e-1683.2
NC_016856:606742:619284619284619613330Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Ssensor kinase5e-1683.2
NC_016857:604792:618078618078618407330Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74sensor kinase5e-1683.2
NC_016860:644095:656637656637656966330Salmonella enterica subsp. enterica serovar Typhimurium strsensor kinase5e-1683.2
NC_016863:606742:619283619283619612330Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1sensor kinase5e-1683.2
NC_017046:604789:618075618075618404330Salmonella enterica subsp. enterica serovar Typhimurium str. 798two component regulator sensor kinase5e-1683.2
NC_010102:2495441:249928824992882499470183Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-1581.3
NC_011748:3983432:3987467398746739889481482Escherichia coli 55989, complete genomesensor kinase CusS9e-1475.5
NC_009778:4188000:4201219420121942027001482Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein9e-1475.5
CU928145:3983432:3987467398746739889481482Escherichia coli 55989 chromosome, complete genomeputative sensory histidine kinase in two-component regulatory system with SilR, senses silver ions9e-1475.5
NC_014121:5000069:5003669500366950051501482Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completesensor kinase CusS9e-1475.5
NC_018868:619113:6375816375816389961416Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeputative 2-component sensor protein2e-1270.9
NC_008344:1:1861518615200271413Nitrosomonas eutropha C91, complete genomeheavy metal sensor signal transduction histidine kinase3e-1167
NC_009138:519965:5404215404215418691449Herminiimonas arsenicoxydans, complete genomesensory histidine kinase in two-component regulatory system with CusR, regulation of copper resistance, senses copper ions2e-1064.7
NC_009659:892272:8922728922728937141443Janthinobacterium sp. Marseille chromosome, complete genomesensor kinase of copper sensing two-component system2e-1064.3
NC_014640:1179382:1187479118747911889151437Achromobacter xylosoxidans A8 chromosome, complete genomesensor kinase CusS4e-1063.5
NC_016616:1091606:1101071110107111024381368Dechlorosoma suillum PS chromosome, complete genomeheavy metal sensor kinase3e-1063.5
NC_016147:623666:6299986299986314101413Pseudoxanthomonas spadix BD-a59 chromosome, complete genometwo-component system heavy metal sensor histidine kinase4e-1063.2
NC_016616:2768053:2796749279674927981491401Dechlorosoma suillum PS chromosome, complete genomeheavy metal sensor kinase1e-0962.4
NC_014960:1697818:1709635170963517110591425Anaerolinea thermophila UNI-1, complete genometwo-component sensor histidine kinase1e-0858.5
NC_014624:1549312:1550010155001015517671758Eubacterium limosum KIST612 chromosome, complete genomemulti-sensor signal transduction histidine kinase4e-0857
NC_011772:4487378:4519847451984745216101764Bacillus cereus G9842, complete genomesensory box histidine kinase PhoR5e-0856.6
NC_014314:238043:2560632560632575021440Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeintegral membrane sensor signal transduction histidine kinase6e-0856.2
NC_016584:4860360:4862193486219348639951803Desulfosporosinus orientis DSM 765 chromosome, complete genomesignal transduction histidine kinase6e-0856.2
NC_018515:3865522:3867116386711638689331818Desulfosporosinus meridiei DSM 13257 chromosome, complete genomesignal transduction histidine kinase7e-0855.8
NC_015731:2400526:2406024240602424073311308Nitrosomonas sp. Is79A3 chromosome, complete genomePAS/PAC sensor signal transduction histidine kinase1e-0755.5
NC_014376:2766326:2784594278459427859791386Clostridium saccharolyticum WM1 chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase1e-0755.1
NC_008782:2857899:2889959288995928913621404Acidovorax sp. JS42, complete genomeheavy metal sensor signal transduction histidine kinase1e-0755.1
NC_009328:814530:8650158650158660791065Geobacillus thermodenitrificans NG80-2 chromosome, complete genometwo component system histidine kinase2e-0754.7
NC_008782:1510000:1519984151998415213691386Acidovorax sp. JS42, complete genomeheavy metal sensor signal transduction histidine kinase2e-0754.3
NC_009439:1297851:1320916132091613223491434Pseudomonas mendocina ymp, complete genomeheavy metal sensor signal transduction histidine kinase2e-0754.3
NC_013446:2820000:2861524286152428629271404Comamonas testosteroni CNB-2, complete genomeheavy metal sensor signal transduction histidine kinase3e-0753.9
NC_011898:3159411:3203415320341532045031089Clostridium cellulolyticum H10, complete genomehistidine kinase3e-0753.9
NC_016627:2524307:2536642253664225380271386Clostridium clariflavum DSM 19732 chromosome, complete genomehistidine kinase,HAMP domain-containing protein,histidine kinase3e-0753.9
NC_014220:837926:8494528494528505101059Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomePAS/PAC sensor signal transduction histidine kinase3e-0753.9
NC_018870:484000:5046165046165060581443Thermacetogenium phaeum DSM 12270 chromosome, complete genomealkaline phosphatase synthesis sensor protein PhoR4e-0753.5
NC_007644:2452244:247729624772962477934639Moorella thermoacetica ATCC 39073, complete genome4e-0753.5
NC_007650:420745:4453884453884468391452Burkholderia thailandensis E264 chromosome II, complete sequencesensor protein irlS4e-0753.5
NC_014622:2477019:2492251249225124933571107Paenibacillus polymyxa SC2 chromosome, complete genomesensor histidine kinase vans6e-0753.1
NC_009338:912894:9364939364939376771185Mycobacterium gilvum PYR-GCK chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase6e-0753.1
NC_014168:56728:7544675446771551710Segniliparus rotundus DSM 44985 chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase5e-0753.1
NC_007907:960104:9955189955189968911374Desulfitobacterium hafniense Y51, complete genomehypothetical protein5e-0753.1
NC_010730:741842:7752797752797762921014Sulfurihydrogenibium sp. YO3AOP1, complete genomehistidine kinase5e-0753.1
NC_008705:1557711:1569206156920615703901185Mycobacterium sp. KMS, complete genomeintegral membrane sensor signal transduction histidine kinase5e-0753.1
NC_016602:173314:1980251980251993621338Vibrio furnissii NCTC 11218 chromosome 1, complete sequencesensory histidine kinase in two-component regulatory system with CusR, senses copper ions5e-0753.1
NC_007973:1889076:1901477190147719028861410Ralstonia metallidurans CH34 chromosome 1, complete sequenceheavy metal sensor signal transduction histidine kinase7e-0752.8
NC_013595:9651019:9672189967218996739701782Streptosporangium roseum DSM 43021, complete genomeHistidine kinase7e-0752.8
NC_015436:474710:4945974945974964801884Spirochaeta coccoides DSM 17374 chromosome, complete genomemulti-sensor signal transduction histidine kinase1e-0652.4
NC_015422:3513689:352814535281453528396252Alicycliphilus denitrificans K601 chromosome, complete genome1e-0652.4
NC_019745:2346970:2362351236235123671774827Gloeocapsa sp. PCC 7428, complete genomemulti-sensor hybrid histidine kinase9e-0752.4
NC_019748:763011:7673857673857686321248Stanieria cyanosphaera PCC 7437, complete genomeintegral membrane sensor signal transduction histidine kinase8e-0752.4
NC_015589:1523203:1536925153692515383761452Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeATP-binding region ATPase domain-containing protein8e-0752.4
NC_004668:3156247:3171390317139031725711182Enterococcus faecalis V583, complete genomesensor histidine kinase1e-0652
NC_009659:1923925:1949616194961619509921377Janthinobacterium sp. Marseille chromosome, complete genomesensor kinase of copper sensing two-component system1e-0652
NC_014106:54587:7533875338771911854Lactobacillus crispatus ST1, complete genomeSensor protein2e-0651.6
NC_010610:107500:1324151324151335571143Lactobacillus fermentum IFO 3956, complete genometwo-component system histidine kinase1e-0651.6
NC_014614:2359046:2374415237441523755961182Clostridium sticklandii, complete genomeSensor protein1e-0651.6
NC_003228:1832838:1847598184759818494301833Bacteroides fragilis NCTC 9343, complete genomeputative two-component histidine kinase sensor protein1e-0651.6
NC_015177:258504:279046279046279909864Pedobacter saltans DSM 12145 chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase2e-0651.2
NC_006347:1815687:1829467182946718312481782Bacteroides fragilis YCH46, complete genometwo-component system sensor histidine kinase2e-0651.2
NC_013385:1007616:1027988102798810292441257Ammonifex degensii KC4, complete genomemulti-sensor signal transduction histidine kinase2e-0651.2
NC_014216:2054860:2077809207780920792991491Desulfurivibrio alkaliphilus AHT2 chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase2e-0651.2
NC_016776:1836000:1854123185412318559551833Bacteroides fragilis 638R, complete genomeputative two-component histidine kinase sensor protein2e-0651.2
NC_014355:1461355:1483607148360714850521446Candidatus Nitrospira defluvii, complete genomeputative sensor histidine kinase CusS2e-0651.2
NC_002947:6123608:6135650613565061370591410Pseudomonas putida KT2440, complete genomesensor protein CopS2e-0651.2
NC_007614:2517226:2535510253551025368111302Nitrosospira multiformis ATCC 25196 chromosome 1, completePAS/PAC sensor signal transduction histidine kinase3e-0650.8
NC_021177:7870464:7884763788476378889084146Streptomyces fulvissimus DSM 40593, complete genomePAS/PAC sensor hybrid histidine kinase2e-0650.8
NC_016114:7252500:7264606726460672663901785Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase2e-0650.8
NC_013205:2610956:2650966265096626522551290Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,PAS/PAC sensor signal transduction histidine kinase3e-0650.4
NC_009767:3335021:3350611335061133520201410Roseiflexus castenholzii DSM 13941, complete genomeintegral membrane sensor signal transduction histidine kinase4e-0650.4
NC_016641:4011000:4020740402074040221011362Paenibacillus terrae HPL-003 chromosome, complete genomehistidine kinase4e-0650.1
NC_014151:370882:383091383091384089999Cellulomonas flavigena DSM 20109 chromosome, complete genomeresponse regulator receiver sensor signal transduction histidine kinase4e-0650.1
NC_014814:5422972:5450423545042354516071185Mycobacterium sp. Spyr1 chromosome, complete genomesignal transduction histidine kinase6e-0649.7
NC_011593:2372362:2375245237524523764291185Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,histidine kinase5e-0649.7
NC_017219:2372000:2375063237506323762561194Bifidobacterium longum subsp. infantis ATCC 15697, complete genometwo-component sensor kinase5e-0649.7
NC_016935:789849:8114318114318127081278Paenibacillus mucilaginosus 3016 chromosome, complete genomehistidine kinase5e-0649.7
NC_017059:376226:3963213963213978471527Rhodospirillum photometricum DSM 122, complete genomeSensor protein9e-0648.9
NC_008595:661507:6775396775396789751437Mycobacterium avium 104, complete genomesensor histidine kinase PhoR1e-0548.9