Pre_GI: BLASTP Hits

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Query: NC_004605:741000:757085 Vibrio parahaemolyticus RIMD 2210633 chromosome II, complete

Start: 757085, End: 757951, Length: 867

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014966:638355:653937653937654815879Vibrio vulnificus MO6-24/O chromosome II, complete sequencetype II/IV secretion system protein TadC, associated with Flp pilus assembly5e-80297
NC_005140:660305:675959675959676837879Vibrio vulnificus YJ016 chromosome II, complete sequenceFlp pilus assembly protein TadC4e-76284
NC_004460:81687:978079780798217411Vibrio vulnificus CMCP6 chromosome II, complete sequenceFlp pilus assembly protein TadC2e-37156
NC_012913:167034:175091175091175957867Aggregatibacter aphrophilus NJ8700, complete genomeTadC1e-29130
NC_016513:974402:985732985732986598867Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeFlp pilus assembly protein TadC2e-28126
NC_013416:668152:679472679472680338867Aggregatibacter actinomycetemcomitans D11S-1, complete genomeTadC6e-28124
NC_013716:4306695:437314943731494374000852Citrobacter rodentium ICC168, complete genomeputative tight adherence protein C5e-26118
NC_010465:733916:741391741391742224834Yersinia pseudotuberculosis YPIII, complete genometype II secretion system protein2e-24113
NC_006155:3992818:401085140108514011684834Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein8e-24111
NC_003143:741169:749629749629750462834Yersinia pestis CO92, complete genomehypothetical protein1e-23110
NC_004088:3859173:387207038720703872903834Yersinia pestis KIM, complete genomehypothetical protein1e-23110
NC_008149:650706:659167659167660000834Yersinia pestis Nepal516, complete genomehypothetical protein1e-23110
NC_005810:3333000:334157133415713342404834Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein1e-23110
NC_010634:3905369:392231239223123923145834Yersinia pseudotuberculosis PB1/+, complete genometype II secretion system protein1e-23110
NC_010159:259695:272592272592273425834Yersinia pestis Angola, complete genometype II secretion system protein1e-23110
NC_008150:3430000:344295234429523443785834Yersinia pestis Antiqua, complete genomehypothetical protein1e-23110
NC_017265:3724500:373743037374303738263834Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,Type II/IV secretion system protein TadC,associated with Flp pilus assembly1e-23110
NC_017168:341233:354840354840355673834Yersinia pestis A1122 chromosome, complete genomehypothetical protein1e-23110
NC_017160:737000:745514745514746347834Yersinia pestis D182038 chromosome, complete genomehypothetical protein1e-23110
NC_014029:792719:801173801173802006834Yersinia pestis Z176003 chromosome, complete genomehypothetical protein1e-23110
NC_009381:522731:531190531190532023834Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein1e-23110
NC_009708:692508:701022701022701855834Yersinia pseudotuberculosis IP 31758 chromosome, complete genometype II secretion system protein2e-23109
NC_017154:734875:743335743335743916582Yersinia pestis D106004 chromosome, complete genomehypothetical protein2e-23109
NC_008800:3955284:396851239685123969336825Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative tight adherance operon protein2e-22106
NC_015224:3820338:384678638467863847610825Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative tight adherance operon protein2e-20100
NC_007794:1553000:156879815687981569766969Novosphingobium aromaticivorans DSM 12444, complete genometype II secretion system protein1e-1377
NC_011894:2618951:265844826584482659359912Methylobacterium nodulans ORS 2060, complete genometype II secretion system protein6e-1374.7
NC_009485:1604942:160494216049421605904963Bradyrhizobium sp. BTAi1 chromosome, complete genomehypothetical protein8e-1271.2
NC_013223:1349000:136377313637731364735963Desulfohalobium retbaense DSM 5692, complete genomeType II secretion system F domain protein6e-1168.2
NC_009901:2427291:244682424468242447786963Shewanella pealeana ATCC 700345, complete genometype II secretion system protein5e-1065.5
NC_010334:2749250:275649927564992757461963Shewanella halifaxensis HAW-EB4, complete genometype II secretion system protein6e-1065.1
NC_010718:2460893:246133624613362462289954Natranaerobius thermophilus JW/NM-WN-LF, complete genometype II secretion system protein4e-0962
NC_010338:4530403:455221745522174553203987Caulobacter sp. K31, complete genometype II secretion system protein6e-0961.6
NC_004463:3857763:386687838668783867786909Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein2e-0860.1
NC_002932:440191:456262456262457200939Chlorobium tepidum TLS, complete genomeTadC protein2e-0860.1
NC_021171:4549673:456038545603854561314930Bacillus sp. 1NLA3E, complete genometype II secretion system protein5e-0755.1