Pre_GI: BLASTP Hits

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Query: NC_004578:6334735:6359624 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 6359624, End: 6359956, Length: 333

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020209:1949500:196102319610231961355333Pseudomonas poae RE*1-1-14, complete genomehypothetical protein1e-47188
NC_016830:952342:964653964653964985333Pseudomonas fluorescens F113 chromosome, complete genometransposase is3 is911 family protein2e-42171
NC_016830:5994494:601302060130206013352333Pseudomonas fluorescens F113 chromosome, complete genometransposase is3 is911 family protein2e-42171
NC_016830:2642881:264842826484282648760333Pseudomonas fluorescens F113 chromosome, complete genometransposase is3 is911 family protein2e-42171
NC_015379:4630367:464368946436894644021333Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative transposase, IS66 family4e-37153
NC_015379:2575000:259716425971642597505342Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative transposase, IS66 family3e-35147
NC_015379:908904:964303964303964644342Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative transposase, IS66 family3e-35147
NC_016830:3869572:392236539223653922730366Pseudomonas fluorescens F113 chromosome, complete genometransposase is3 is911 family protein1e-34144
NC_011992:1234610:125100112510011251339339Acidovorax ebreus TPSY, complete genometransposase IS3/IS911 family protein2e-2097.4
NC_009649:16907:427744277443037264Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3,hypothetical protein2e-1994
NC_020260:882307:911330911330911593264Cronobacter sakazakii Sp291, complete genomehypothetical protein2e-1994
NC_017986:4885979:490101949010194901339321Pseudomonas putida ND6 chromosome, complete genomeISPpu14, transposase Orf13e-1993.6
NC_017986:2548720:256416525641652564485321Pseudomonas putida ND6 chromosome, complete genomeISPpu14, transposase Orf13e-1993.6
NC_002947:4994335:503619150361915036511321Pseudomonas putida KT2440, complete genomeISPpu14, transposase Orf15e-1993.2
NC_002947:6152500:615486061548606155180321Pseudomonas putida KT2440, complete genomeISPpu14, transposase Orf15e-1993.2
NC_012660:5793200:582548558254855825802318Pseudomonas fluorescens SBW25 chromosome, complete genomeputative transposase8e-1992.4
NC_014910:1591003:159744815974481597876429Alicycliphilus denitrificans BC chromosome, complete genometransposase is3/is911 family protein2e-1890.9
NC_015422:2858228:291509529150952915523429Alicycliphilus denitrificans K601 chromosome, complete genometransposase IS3/IS911 family protein2e-1890.9
NC_014910:1912552:192794719279471928375429Alicycliphilus denitrificans BC chromosome, complete genometransposase is3/is911 family protein2e-1890.9
NC_015422:3184823:319825931982593198687429Alicycliphilus denitrificans K601 chromosome, complete genometransposase IS3/IS911 family protein2e-1890.9
NC_011000:3514338:354232235423223542705384Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative transposase6e-1889.4
NC_011000:1262324:126717112671711267554384Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative transposase6e-1889.4
NC_017986:409899:418958418958419278321Pseudomonas putida ND6 chromosome, complete genomeISPpu14, transposase Orf11e-1788.6
NC_020209:397376:429924429924430241318Pseudomonas poae RE*1-1-14, complete genomeISPpu14, transposase Orf11e-1788.2
NC_016626:1592781:159875015987501599136387Burkholderia sp. YI23 plasmid byi_1p, complete sequenceputative transposase1e-1788.2
NC_010512:1015557:104074910407491041132384Burkholderia cenocepacia MC0-3 chromosome 3, complete sequencetransposase IS3/IS911 family protein2e-1787.4
NC_002947:4994335:503324350332435033563321Pseudomonas putida KT2440, complete genomeISPpu14, transposase Orf15e-1786.7
NC_002947:4484824:448639544863954486715321Pseudomonas putida KT2440, complete genomeISPpu14, transposase Orf15e-1786.7
NC_010501:30000:422444224442564321Pseudomonas putida W619, complete genometransposase IS3/IS911 family protein5e-1786.7
NC_012660:2045398:205981820598182060150333Pseudomonas fluorescens SBW25 chromosome, complete genomeputative transposase1e-1685.5
NC_004578:4869673:488083348808334881072240Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein2e-1684
NC_010170:1152131:115835911583591158745387Bordetella petrii, complete genometransposase3e-1580.5
NC_007908:1252189:125737812573781257782405Rhodoferax ferrireducens T118, complete genometransposase IS3/IS9114e-1580.1
NC_007908:3363902:338422333842233384627405Rhodoferax ferrireducens T118, complete genometransposase IS3/IS9114e-1580.1
NC_012792:707864:711230711230711577348Variovorax paradoxus S110 chromosome 2, complete genometransposase IS3/IS911 family protein7e-1579.3
NC_008752:725189:767892767892768236345Acidovorax avenae subsp. citrulli AAC00-1, complete genometransposase IS3/IS911 family protein1e-1478.6
NC_007952:1293024:130614713061471306533387Burkholderia xenovorans LB400 chromosome 2, complete sequencehypothetical protein1e-1478.2
NC_007951:2233676:224135922413592241745387Burkholderia xenovorans LB400 chromosome 1, complete sequencehypothetical protein1e-1478.2
NC_008463:5246954:530117353011735301439267Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative transposase2e-1477.4
NC_018691:3525430:354012335401233540425303Alcanivorax dieselolei B5 chromosome, complete genomeTransposase-like protein6e-1476.3
NC_018691:1822731:184813918481391848441303Alcanivorax dieselolei B5 chromosome, complete genomeTransposase-like protein6e-1476.3
NC_018691:1322389:133712113371211337423303Alcanivorax dieselolei B5 chromosome, complete genomeTransposase-like protein6e-1476.3
NC_007005:830467:849022849022849339318Pseudomonas syringae pv. syringae B728a, complete genome2e-1374.7
NC_008782:2568027:261179026117902612242453Acidovorax sp. JS42, complete genometransposase IS3/IS911 family protein2e-1270.9
NC_009524:1796000:180997918099791810386408Psychrobacter sp. PRwf-1 chromosome, complete genometransposase IS3/IS911 family protein7e-1165.9
NC_010676:2869936:287185728718572872336480Burkholderia phytofirmans PsJN chromosome 2, complete sequencetransposase IS3/IS911 family protein3e-1063.5
NC_014394:2577949:259843525984352598797363Gallionella capsiferriformans ES-2 chromosome, complete genometransposase IS3/IS911 family protein2e-0961.2
NC_010660:33109:376623766238081420Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS66 family element, orf13e-0960.5
NC_015727:1050500:105270510527051053037333Cupriavidus necator N-1 plasmid BB1p, complete sequencetransposase IS669e-0958.9
NC_012791:721813:725621725621726007387Variovorax paradoxus S110 chromosome 1, complete genometransposase IS3/IS911 family protein5e-0856.6
NC_011745:4862218:486790848679084868333426Escherichia coli ED1a chromosome, complete genomeputative transposase8e-0855.8
NC_010515:2691000:270497527049752705391417Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencetransposase IS3/IS911 family protein1e-0755.1
NC_003047:3360000:336349033634903363951462Sinorhizobium meliloti 1021, complete genomehypothetical protein2e-0754.7
NC_012724:2547500:258005125800512580506456Burkholderia glumae BGR1 chromosome 1, complete genomeTransposase IS3/IS9112e-0754.3
NC_012721:979656:986270986270986725456Burkholderia glumae BGR1 chromosome 2, complete genomeTransposase IS3/IS9112e-0754.3
NC_007951:2087385:211497721149772115459483Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative transposase, ISPpu14 Orf1 like3e-0753.9
NC_007951:4741620:475864047586404759164525Burkholderia xenovorans LB400 chromosome 1, complete sequenceputative ISPpu14, transposase Orf13e-0753.9
NC_004431:3409389:345496234549623455399438Escherichia coli CFT073, complete genomeUnknown in putative ISEc84e-0753.5
NC_011751:3453683:347806134780613478498438Escherichia coli UMN026 chromosome, complete genomeputative transposase4e-0753.5
CU928159:30700:331343313433571438Escherichia coli str. 55989 plasmid 55989p, complete genomeconserved hypothetical protein, putative transposase IS3 family4e-0753.5
NC_007510:1959883:200343920034392003855417Burkholderia sp. 383 chromosome 1, complete sequencetransposase IS3/IS9111e-0652
NC_011748:4792703:479270347927034793128426Escherichia coli 55989, complete genomeputative transposase OrfA from plasmid origin3e-0650.8
CU928145:4792703:479270347927034793128426Escherichia coli 55989 chromosome, complete genomeputative transposase OrfA from plasmid origin3e-0650.8
CP002797:4603787:462158746215874622012426Escherichia coli NA114, complete genomeIS-66 transposase3e-0650.8
NC_013941:3676146:370144037014403701865426Escherichia coli O55:H7 str. CB9615 chromosome, complete genometransposase-like protein3e-0650.4
NC_013353:5090696:509396850939685094393426Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein3e-0650.4
NC_013353:3627355:365264736526473653072426Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein3e-0650.4
AP010958:3627355:365264736526473653072426Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein3e-0650.4
AP010958:5090696:509396850939685094393426Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein3e-0650.4
NC_015458:2998000:300163430016343002077444Pusillimonas sp. T7-7 chromosome, complete genometransposase IS3/IS9114e-0650.1
NC_015572:1252000:125556412555641255971408Methylomonas methanica MC09 chromosome, complete genometransposase IS3/IS911 family protein8e-0649.3