Pre_GI: BLASTP Hits

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Query: NC_004578:4432983:4446636 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 4446636, End: 4446914, Length: 279

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012660:4558122:457915245791524579373222Pseudomonas fluorescens SBW25 chromosome, complete genome5e-1476.3
NC_016856:1326503:132894413289441329528585Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sphage tail assembly-like protein8e-0855.8
NC_011080:2722492:273336927333692733947579Salmonella enterica subsp. enterica serovar Newport str. SL254,phage tail assembly protein1e-0755.1
NC_003197:2720726:273333727333372733915579Salmonella typhimurium LT2, complete genomephage tail assembly-like protein1e-0755.1
NC_016810:2719779:273102427310242731602579Salmonella enterica subsp. enterica serovar Typhimurium strDNA Binding protein1e-0755.1
NC_016856:2773995:278486627848662785444579Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sphage tail assembly-like protein1e-0755.1
NC_016857:2719779:273102427310242731602579Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74phage tail assembly-like protein1e-0755.1
NC_016860:2716152:272874527287452729323579Salmonella enterica subsp. enterica serovar Typhimurium strphage tail assembly protein1e-0755.1
NC_016863:2721826:273307127330712733649579Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1phage tail assembly-like protein1e-0755.1
NC_017046:2717810:273040327304032730981579Salmonella enterica subsp. enterica serovar Typhimurium str. 798DNA Binding protein1e-0755.1
NC_016856:1957263:1974881197488119759391059Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sphage side tail fiber assembly protein1e-0755.1
NC_009800:2788164:279908627990862799670585Escherichia coli HS, complete genometail fiber assembly protein1e-0755.1
NC_011415:644811:652003652003652578576Escherichia coli SE11 chromosome, complete genomeputative phage tail assembly protein2e-0754.7
NC_003197:1945858:196347619634761964357882Salmonella typhimurium LT2, complete genomephage-tail assembly-like protein2e-0754.7
NC_016810:1903426:192104419210441921925882Salmonella enterica subsp. enterica serovar Typhimurium strPhage Tail Assembly Protein2e-0754.7
NC_016857:1903426:192104419210441921925882Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74phage-tail assembly-like protein2e-0754.7
NC_016863:1905454:192307219230721923953882Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1phage-tail assembly-like protein2e-0754.7
NC_017046:1902788:192040719204071921288882Salmonella enterica subsp. enterica serovar Typhimurium str. 798Phage Tail Assembly Protein2e-0754.7
NC_012759:1517500:152439315243931524968576Escherichia coli BW2952 chromosome, complete genomeQin prophage; tail fiber assembly protein3e-0753.9
NC_000913:1625500:163233416323341632909576Escherichia coli K12, complete genomeQin prophage; predicted tail fibre assembly protein3e-0753.9
AC_000091:1627049:163602416360241636599576Escherichia coli W3110 DNA, complete genomepredicted tail fibre assembly protein3e-0753.9
NC_010473:1712984:172195917219591722534576Escherichia coli str. K-12 substr. DH10B, complete genomeQin prophage; predicted tail fibre assembly protein3e-0753.9
NC_011083:1993672:201249820124982012734237Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative Tail fiber assembly protein homolog from lambdoid prophage4e-0753.5
NC_011080:1944226:196848219684821969363882Salmonella enterica subsp. enterica serovar Newport str. SL254,caudovirales tail fibre assembly protein4e-0753.1
NC_000913:558920:580757580757581320564Escherichia coli K12, complete genomeDLP12 prophage; predicted tail fiber assembly protein (pseudogene)5e-0753.1
AC_000091:558920:580757580757581320564Escherichia coli W3110 DNA, complete genome5e-0753.1
NC_010473:623810:633475633475633912438Escherichia coli str. K-12 substr. DH10B, complete genome7e-0752.8
NC_010473:498252:520215520215520652438Escherichia coli str. K-12 substr. DH10B, complete genome7e-0752.8
NC_011740:2737467:275506527550652755649585Escherichia fergusonii ATCC 35469, complete genomeputative tail fibre chaperone; Qin prophage6e-0752.8
NC_016831:1690811:170841617084161708652237Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein6e-0752.8
NC_013941:733286:740261740261740845585Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeTail fiber assembly protein9e-0752.4
NC_011274:1299475:130654113065411307110570Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91phage tail fiber assembly protein9e-0752.4
NC_011205:1391971:139546013954601396029570Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853phage tail assembly protein9e-0752.4
NC_013361:649518:657331657331657903573Escherichia coli O26:H11 str. 11368 chromosome, complete genometail fiber assembly protein1e-0652
AP010958:604719:611775611775612338564Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative tail fiber assembly protein1e-0652
NC_013353:604719:611775611775612338564Escherichia coli O103:H2 str. 12009, complete genometail fiber assembly protein1e-0652
NC_011294:1006630:101675710167571017338582Salmonella enterica subsp. enterica serovar Enteritidis strphage tail fiber assembly protein1e-0651.6
NC_011205:1107998:111738411173841117965582Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853tail fiber assembly like-protein1e-0651.6
NC_011294:1220526:124264112426411242934294Salmonella enterica subsp. enterica serovar Enteritidis str1e-0651.6
NC_011751:1377457:139787813978781398144267Escherichia coli UMN026 chromosome, complete genomeputative tail fiber assembly protein2e-0651.2
NC_011094:1923870:1940354194035419416821329Salmonella enterica subsp. enterica serovar Schwarzengrund strside tail fiber protein2e-0651.2
NC_020064:871338:878066878066878491426Serratia marcescens FGI94, complete genomeCaudovirales tail fiber assembly protein2e-0651.2
NC_011751:1377457:139651413965141397098585Escherichia coli UMN026 chromosome, complete genomeputative tail fiber chaperone; Qin prophage3e-0650.8
NC_007712:1182518:119294511929451193556612Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein7e-0649.3