Pre_GI: BLASTP Hits

Some Help

Query: NC_004578:4432983:4446042 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 4446042, End: 4446575, Length: 534

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012660:4558122:457641545764154576948534Pseudomonas fluorescens SBW25 chromosome, complete genomeputative phage encoded lysozyme2e-74277
NC_005773:2177184:218310721831072183652546Pseudomonas syringae pv. phaseolicola 1448A, complete genomeprophage PSPPH02, putative chitinase4e-66250
NC_004578:3817330:383103838310383831583546Pseudomonas syringae pv. tomato str. DC3000, complete genomelysozyme, putative2e-62237
NC_004129:2234851:224007122400712240622552Pseudomonas fluorescens Pf-5, complete genomepyocin R2_PP, lytic enzyme5e-61233
NC_005773:2177184:219379921937992194344546Pseudomonas syringae pv. phaseolicola 1448A, complete genomeprophage PSPPH02, putative chitinase4e-60230
NC_015733:1976752:198241519824151982966552Pseudomonas putida S16 chromosome, complete genomepyocin R2_PP, lytic enzyme8e-57219
NC_017986:4124335:412990241299024130471570Pseudomonas putida ND6 chromosome, complete genomeglycoside hydrolase family protein2e-52204
NC_010002:3785313:378740737874073787958552Delftia acidovorans SPH-1, complete genomeputative lysozyme6e-46182
NC_016830:4999946:501578150157815016344564Pseudomonas fluorescens F113 chromosome, complete genomepyocin lytic enzyme7e-45179
NC_016002:2037374:205644220564422056984543Pseudogulbenkiania sp. NH8B, complete genomeglycoside hydrolase family protein1e-41168
NC_009255:1369200:138805713880571388635579Burkholderia vietnamiensis G4 chromosome 2, complete sequenceglycoside hydrolase family protein1e-35149
NC_017047:1906000:191830019183001918926627Rahnella aquatilis HX2 chromosome, complete genomeputative endolysin5e-32136
NC_013282:1200993:122515912251591225785627Cronobacter turicensis, complete genomeUncharacterized protein HI14154e-29127
NC_013592:4295449:431316143131614313787627Dickeya dadantii Ech586, complete genomeglycoside hydrolase family 197e-29126
NC_010397:1802724:1809368180936818107411374Mycobacterium abscessus chromosome Chromosome, complete sequenceBacteriophage protein1e-28125
NC_012912:325913:332536332536333162627Dickeya zeae Ech1591, complete genomeglycoside hydrolase family 192e-28124
NC_011770:1431740:145211114521111452728618Pseudomonas aeruginosa LESB58, complete genomeCOG3179: Predicted chitinase2e-27122
NC_016047:345491:355177355177355635459Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeendopeptidase LytF1e-27122
NC_016641:1148220:1156074115607411570781005Paenibacillus terrae HPL-003 chromosome, complete genomehypothetical protein1e-26119
NC_017325:1488841:148964314896431490611969Sinorhizobium meliloti SM11 chromosome, complete genomechitinase-like protein1e-26119
NC_017325:1897500:189797818979781898946969Sinorhizobium meliloti SM11 chromosome, complete genomechitinase-like protein5e-26117
NC_014168:1724993:1731346173134617328481503Segniliparus rotundus DSM 44985 chromosome, complete genomefamily 19 glycoside hydrolase9e-26116
NC_014121:1682638:169633316963331696881549Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completelytic enzyme3e-25114
NC_016612:3314846:333598533359853336533549Klebsiella oxytoca KCTC 1686 chromosome, complete genomelytic enzyme2e-24112
NC_015663:4522109:452715045271504527779630Enterobacter aerogenes KCTC 2190 chromosome, complete genomelytic enzyme2e-24111
NC_014973:5099543:5124478512447851254881011Geobacter sp. M18 chromosome, complete genomeglycoside hydrolase family 195e-24110
NC_020301:853267:865370865370865978609Bartonella vinsonii subsp. berkhoffii str. Winnie, complete genomehypothetical protein5e-24110
NC_010161:1324381:133379013337901334371582Bartonella tribocorum CIP 105476, complete genomepeptidoglycan binding protein8e-24109
NC_010161:1501758:151116715111671511748582Bartonella tribocorum CIP 105476, complete genomehypothetical protein8e-24109
NC_011770:860944:881683881683882300618Pseudomonas aeruginosa LESB58, complete genomePredicted chitinase; lytic protein1e-23109
NC_010161:1949637:195948819594881960069582Bartonella tribocorum CIP 105476, complete genomehypothetical protein2e-23108
NC_010161:2548254:255766425576642558245582Bartonella tribocorum CIP 105476, complete genomehypothetical protein2e-23108
NC_014150:1607873:162002416200241620638615Brachyspira murdochii DSM 12563 chromosome, complete genomeglycoside hydrolase family 191e-23108
NC_020181:5217000:522775752277575228383627Enterobacter aerogenes EA1509E, complete genomehypothetical protein1e-23108
NC_013282:1804909:182501118250111825565555Cronobacter turicensis, complete genomehypothetical protein8e-23106
NC_018604:305957:314155314155314781627Brachyspira pilosicoli WesB complete genomeglycoside hydrolase family 191e-22105
NC_018607:2010500:201515420151542015747594Brachyspira pilosicoli B2904 chromosome, complete genomeglycoside hydrolase1e-22105
NC_011094:638552:664550664550665164615Salmonella enterica subsp. enterica serovar Schwarzengrund strlytic enzyme1e-22105
NC_015761:1017301:102522610252261025840615Salmonella bongori NCTC 12419, complete genomebacteriophage protein4e-22103
NC_019908:807000:812628812628813203576Brachyspira pilosicoli P43/6/78 chromosome, complete genomeglycoside hydrolase family protein2e-21101
NC_013850:2182337:220954522095452210171627Klebsiella variicola At-22 chromosome, complete genomeglycoside hydrolase family 196e-21100
NC_009648:1541699:156536715653671565993627Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative glycoside hydrolase6e-21100
NC_010067:2304313:232964023296402329939300Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein4e-21100
NC_020181:5384015:539721353972135397842630Enterobacter aerogenes EA1509E, complete genomePhage endolysin8e-2199.8
NC_012214:1974500:198840819884081989031624Erwinia pyrifoliae Ep1/96, complete genomeLytic enzyme1e-2099.4
NC_014150:1936154:193923519392351939828594Brachyspira murdochii DSM 12563 chromosome, complete genomeglycoside hydrolase family 191e-2099
NC_014150:1497381:150134615013461501939594Brachyspira murdochii DSM 12563 chromosome, complete genomeglycoside hydrolase family 191e-2099
NC_011601:2806392:281283928128392813465627Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeendolysin3e-2097.8
NC_014150:2560475:256367625636762564269594Brachyspira murdochii DSM 12563 chromosome, complete genomeglycoside hydrolase family 194e-2097.4
NC_012731:2083650:211163421116342112260627Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative glycoside hydrolase5e-2097.1
NC_017243:58000:613536135361964612Brachyspira intermedia PWS/A chromosome, complete genomeglycoside hydrolase7e-2096.7
NC_003902:3514000:353599035359903536631642Xanthomonas campestris pv. campestris str. ATCC 33913, completephage-related lytic enzyme9e-2096.3
NC_017025:1761918:176969117696911770404714Flavobacterium indicum GPTSA100-9, complete genomeGlycoside hydrolase family 19, putative chitinase6e-1993.6
NC_017243:1734179:174576917457691746251483Brachyspira intermedia PWS/A chromosome, complete genomeendolysin glycoside hydrolase6e-1890.5
NC_018748:1443176:1454863145486314560471185Emticicia oligotrophica DSM 17448 chromosome, complete genomehypothetical protein1e-1789.4
NC_009937:958576:961972961972962877906Azorhizobium caulinodans ORS 571, complete genomeputative chitinase9e-1786.3
NC_005085:24623:3211132111342522142Chromobacterium violaceum ATCC 12472, complete genomeprobable hydroxyethylthiazole kinase4e-1684.3
NC_018604:2871328:288056228805622881140579Brachyspira pilosicoli WesB complete genomeendolysin glycoside hydrolase1e-1582.4
NC_019908:1886647:189339118933911893969579Brachyspira pilosicoli P43/6/78 chromosome, complete genomeendolysin glycoside hydrolase3e-1581.3
NC_018607:2747462:275671727567172757295579Brachyspira pilosicoli B2904 chromosome, complete genomeendolysin glycoside hydrolase4e-1580.9
NC_014500:4691915:4699276469927647015822307Dickeya dadantii 3937 chromosome, complete genomeEF hand domain-containing protein2e-1478.6
NC_020054:4983691:498793949879394988610672Fibrella aestuarina BUZ 2 drat genomeputative chitinase3e-1477.8
NC_014330:1324500:133383613338361334414579Brachyspira pilosicoli 95/1000 chromosome, complete genomeendolysin glycoside hydrolase5e-1477.4
NC_013961:629307:6394816394816422432763Erwinia amylovora, complete genomehypothetical protein1e-1376.3
NC_013971:3117000:3129058312905831318202763Erwinia amylovora ATCC 49946 chromosome, complete genomechitinase1e-1375.9
NC_011071:2733438:2736843273684327378501008Stenotrophomonas maltophilia R551-3, complete genomechitinase-like protein3e-1374.7
NC_005773:2177184:218469621846962184875180Pseudomonas syringae pv. phaseolicola 1448A, complete genome3e-1374.7
NC_015947:2752450:2755845275584527568521008Burkholderia sp. JV3 chromosome, complete genomeglycoside hydrolase family protein3e-1374.7
NC_011094:1923870:194398219439821944269288Salmonella enterica subsp. enterica serovar Schwarzengrund strlytic enzyme1e-1272.8
NC_011205:1391971:140140014014001401687288Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853lytic enzyme1e-1272.8
NC_010552:592154:6011786011786038052628Burkholderia ambifaria MC40-6 chromosome 2, complete sequencechitinase-like protein3e-1271.2
NC_016835:1:1327313273157052433Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq201,putative chitinase2e-1168.2
NC_014330:1593000:159658415965841597099516Brachyspira pilosicoli 95/1000 chromosome, complete genomeputative Lys-endolysin; glycoside hydrolase4e-1167.4
NC_014118:1171411:1179632117963211821632532Burkholderia sp. CCGE1002 chromosome chromosome 2, completechitinase-like protein9e-1166.2
NC_003047:3419212:3435808343580834377271920Sinorhizobium meliloti 1021, complete genomePUTATIVE PROTEASE TRANSMEMBRANE PROTEIN1e-1066.2
NC_010943:3034366:3037592303759230385961005Stenotrophomonas maltophilia K279a, complete genomeputative bacteriophage protein2e-1065.5
NC_014210:1625954:163517616351761636063888Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,Chitinase3e-1064.7
NC_007347:1:2040320403227332331Ralstonia eutropha JMP134 chromosome 1, complete sequencehypothetical protein6e-1063.5
NC_014623:4788768:479649847964984797475978Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeglycoside hydrolase8e-1063.2
NC_009439:101174:1085661085661117303165Pseudomonas mendocina ymp, complete genomeglycoside hydrolase family protein2e-0962
NC_008319:2335801:233892223389222339572651Synechococcus sp. CC9311, complete genomehypothetical protein6e-0960.5
NC_010717:3868000:3873652387365238765462895Xanthomonas oryzae pv. oryzae PXO99A, complete genomeEF hand domain protein2e-0858.9
NC_010102:1137247:115165111516511151881231Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-0858.2
NC_016810:1903426:192366219236621923892231Salmonella enterica subsp. enterica serovar Typhimurium str3e-0858.2
NC_016860:1943203:196163519616351961865231Salmonella enterica subsp. enterica serovar Typhimurium strlytic enzyme3e-0858.2
NC_016863:1905454:192569019256901925977288Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein4e-0857.8
NC_016857:1903426:192366219236621923949288Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74lytic enzyme4e-0857.8
NC_016856:1957263:197749919774991977786288Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein4e-0857.8
NC_003197:1945858:196609419660941966381288Salmonella typhimurium LT2, complete genomehypothetical protein4e-0857.8
NC_018748:495011:4995694995695030123444Emticicia oligotrophica DSM 17448 chromosome, complete genomeFibronectin type III domain protein4e-0857.4
NC_004578:5916711:5924253592425359262772025Pseudomonas syringae pv. tomato str. DC3000, complete genomeEF hand domain protein4e-0857.4
NC_010067:2529750:2539587253958725418032217Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-0756.2
NC_017243:1734179:175218517521851752775591Brachyspira intermedia PWS/A chromosome, complete genomehypothetical protein1e-0755.8
NC_008390:2448379:2456231245623124592002970Burkholderia cepacia AMMD chromosome 1, complete sequenceEF hand domain protein1e-0652.4