Pre_GI Gene

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Host: NC_004129 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004129:2234851 Pseudomonas fluorescens Pf-5, complete genome

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
223485122374182568tail tape meausure proteinQuickGO ontologyBLASTP
22374272238272846pyocin R2_PP tail formation proteinQuickGO ontologyBLASTP
22382472238453207tail protein X-related proteinQuickGO ontologyBLASTP
22384502238920471hypothetical protein
223900122400441044tail protein DQuickGO ontologyBLASTP
22400712240622552pyocin R2_PP lytic enzymeQuickGO ontologyBLASTP
22406192241140522phage protein putativeQuickGO ontologyBLASTP
224120522429501746hypothetical proteinBLASTP
22430162243699684hypothetical proteinBLASTP
224421522454951281ultraviolet light resistance protein B interruption-CQuickGO ontologyBLASTP
224658522479851401ATPGTP-binding proteinQuickGO ontologyBLASTP
22485312249430900glycosyl transferase group 2 family proteinQuickGO ontologyBLASTP
224941422505171104hypothetical proteinBLASTP
225051422525862073glycosyl transferase group 2 family proteinQuickGO ontologyBLASTP
22526122253559948hypothetical proteinBLASTP
225366422558532190glycosyl transferase group 2 family proteinQuickGO ontologyBLASTP
22558462256547702SanC putativeQuickGO ontologyBLASTP
225654422579201377hypothetical proteinBLASTP
225791722591911275ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
22591812259996816O-antigen ABC transporter permease protein putativeQuickGO ontologyBLASTP