Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:3817330 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
381733038187991470NADH dehydrogenase subunit NQuickGO ontologyBLASTP
381885638199201065hypothetical proteinBLASTP
382006638217451680methyl-accepting chemotaxis proteinQuickGO ontologyBLASTP
382187238231911320sensor histidine kinaseQuickGO ontologyBLASTP
38231883823856669DNA-binding response regulatorQuickGO ontologyBLASTP
38238563824161306lipoprotein putativeQuickGO ontologyBLASTP
38241613824469309hypothetical protein
38245333824739207hypothetical protein
382486738260421176site-specific recombinase phage integrase familyQuickGO ontologyBLASTP
382610438284582355hypothetical proteinBLASTP
38294513829780330hypothetical proteinBLASTP
38300423830836795DNA adenine methylase putativeQuickGO ontologyBLASTP
38310383831583546lysozyme putativeQuickGO ontologyBLASTP
383162238326651044tail protein DQuickGO ontologyBLASTP
38327573832963207tail protein XQuickGO ontologyBLASTP
38329383833702765hypothetical proteinBLASTP
383379338365432751tail tape meausure proteinQuickGO ontologyBLASTP
38366823836984303hypothetical proteinBLASTP
38370003837509510major tail tube proteinQuickGO ontologyBLASTP
383752238386851164major tail sheath proteinQuickGO ontologyBLASTP
38387793839321543tail fiber assembly domain proteinQuickGO ontologyBLASTP
383933038413992070tail fiber protein H putativeQuickGO ontologyBLASTP
38413963842001606tail protein IQuickGO ontologyBLASTP