Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3841322 Shigella flexneri 2a str. 301, complete genome

Start: 3841322, End: 3842143, Length: 822

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020063:3104000:311114431111443111986843Enterobacteriaceae bacterium strain FGI 57, complete genometranscriptional antiterminator1e-87322
NC_013421:2972269:300172530017253002588864Pectobacterium wasabiae WPP163, complete genometranscriptional antiterminator, BglG2e-77289
NC_012917:2786283:280111228011122801975864Pectobacterium carotovorum subsp. carotovorum PC1, complete genometranscriptional antiterminator, BglG6e-77287
NC_014479:3825195:382519538251953826028834Bacillus subtilis subsp. spizizenii str. W23 chromosome, completetranscriptional antiterminator (BglG family) protein3e-62238
NC_016641:3173250:319145331914533192286834Paenibacillus terrae HPL-003 chromosome, complete genomebglg family transcriptional antiterminator2e-61236
NC_014622:1514416:153176415317641532597834Paenibacillus polymyxa SC2 chromosome, complete genomebglg family transcriptional antiterminator1e-60233
NC_006270:4014000:403209640320964032929834Bacillus licheniformis ATCC 14580, complete genometranscriptional antiterminator1e-60233
NC_019842:3755275:375756437575643758391828Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,LicT8e-60230
NC_012880:1613485:161539716153971616227831Dickeya dadantii Ech703, complete genometranscriptional antiterminator, BglG2e-57222
NC_020291:1045058:106055510605551061400846Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometranscription antiterminator4e-57221
NC_006582:3949832:395328839532883954115828Bacillus clausii KSM-K16, complete genometranscriptional antiterminator, BglG family9e-55213
NC_021182:1045218:105904110590411059946906Clostridium pasteurianum BC1, complete genometranscriptional antiterminator4e-54211
NC_016641:373623:402726402726403562837Paenibacillus terrae HPL-003 chromosome, complete genometranscription antiterminator LicT6e-54211
NC_016641:3272500:329680632968063297744939Paenibacillus terrae HPL-003 chromosome, complete genomeBigG family transcription antiterminator4e-53208
NC_008800:2298000:230718223071822308015834Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,beta-glucoside operon antiterminator4e-53208
NC_002570:832480:845788845788846546759Bacillus halodurans C-125, complete genometranscription antiterminator (BigG family)6e-52204
NC_017316:203233:221668221668222438771Enterococcus faecalis OG1RF chromosome, complete genometranscription antiterminator LicT1e-51203
NC_012563:811993:826616826616827455840Clostridium botulinum A2 str. Kyoto, complete genometranscriptional antiterminator, LicT4e-51201
NC_020207:1346579:138583113858311386568738Enterococcus faecium NRRL B-2354, complete genomeBeta-glucoside bgl operon antiterminator, BglG family9e-48190
NC_012470:678661:690018690018690857840Streptococcus equi subsp. zooepidemicus, complete genometranscription antiterminator7e-46184
NC_014410:615992:637397637397638224828Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,transcriptional antiterminator, BglG2e-44179
NC_012912:844339:858343858343859212870Dickeya zeae Ech1591, complete genometranscriptional antiterminator, BglG2e-44179
NC_013515:1483471:148532414853241486163840Streptobacillus moniliformis DSM 12112, complete genometranscriptional antiterminator, BglG2e-43176
NC_004668:241352:255938255938256779842Enterococcus faecalis V583, complete genome2e-43176
NC_012917:833721:864129864129865064936Pectobacterium carotovorum subsp. carotovorum PC1, complete genometranscriptional antiterminator, BglG3e-41169
NC_013421:1038500:104986410498641050805942Pectobacterium wasabiae WPP163, complete genometranscriptional antiterminator, BglG4e-41168
NC_004547:913553:948918948918949769852Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative beta-glucoside operon antiterminator8e-41167
NC_008541:2119883:212569021256902126520831Arthrobacter sp. FB24 chromosome 1, complete sequencetranscriptional antiterminator, BglG8e-38157
NC_013315:435599:435599435599436435837Clostridium difficile CD196 chromosome, complete genomebeta-glucoside bgl operon transcription antiterminator7e-36150
NC_009089:428075:460765460765461601837Clostridium difficile 630, complete genomebeta-glucoside bgl operon transcription antiterminator9e-36150
NC_015687:1478668:150180815018081502671864Clostridium acetobutylicum DSM 1731 chromosome, complete genomeBglG family transcriptional antiterminator9e-35147
NC_015555:1989463:199786819978681998704837Thermoanaerobacterium xylanolyticum LX-11 chromosome, completetranscriptional antiterminator, BglG2e-33142
NC_006322:741516:760981760981761829849Bacillus licheniformis ATCC 14580, complete genomehypothetical protein1e-32140
NC_006270:741731:761197761197762045849Bacillus licheniformis ATCC 14580, complete genometranscriptional antiterminator (BglG family)1e-32140
NC_019970:2263427:226979822697982270622825Thermoanaerobacterium thermosaccharolyticum M0795, complete genometranscriptional antiterminator7e-33140
NC_008261:64678:777267772678574849Clostridium perfringens ATCC 13124, complete genometranscription antiterminator1e-31136
NC_008262:101731:113027113027113875849Clostridium perfringens SM101, complete genomeSACPA operon antiterminator (sacT)6e-31134
NC_017195:1411936:143385414338541434720867Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completetranscription antiterminator, GlcT1e-30133
NC_015601:1463500:146531814653181466166849Erysipelothrix rhusiopathiae str. Fujisawa, complete genometranscriptional antiterminator, BglG1e-30133
NC_021182:2921000:294752729475272948363837Clostridium pasteurianum BC1, complete genometranscriptional antiterminator3e-29129
NC_010723:3395187:342819634281963429050855Clostridium botulinum E3 str. Alaska E43, complete genometranscription antiterminator LicT3e-29129
NC_016047:2658000:266550526655052666353849Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completetranscription antiterminator3e-29128
NC_014334:1039248:106171910617191062549831Lactobacillus casei str. Zhang chromosome, complete genomebeta-glucoside operon antiterminator8e-28124
NC_012914:2360989:238471723847172385577861Paenibacillus sp. JDR-2, complete genometranscriptional antiterminator, BglG7e-28124
NC_016023:1725294:172529417252941726139846Bacillus coagulans 36D1 chromosome, complete genometranscriptional antiterminator BglG2e-27122
NC_018265:75658:873328733288168837Melissococcus plutonius DAT561 plasmid 1, complete sequencetranscription antiterminator4e-27121
NC_013850:2624899:264385626438562644689834Klebsiella variicola At-22 chromosome, complete genometranscriptional antiterminator, BglG8e-27120
NC_011283:2627050:264696026469602647793834Klebsiella pneumoniae 342 chromosome, complete genometranscriptional antiterminator2e-26119
NC_014829:3822125:384634438463443847177834Bacillus cellulosilyticus DSM 2522 chromosome, complete genometranscriptional antiterminator, BglG1e-24113
NC_016935:7426389:742849374284937429365873Paenibacillus mucilaginosus 3016 chromosome, complete genometranscriptional antiterminator BglG2e-21103
NC_011742:3057444:306899030689903069871882Escherichia coli S88 chromosome, complete genometranscription antiterminator1e-21103
NC_011745:3197584:320944732094473210328882Escherichia coli ED1a chromosome, complete genomeputative transcription antiterminator1e-21103
NC_014624:2996377:301194630119463012770825Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein1e-21103
NC_013361:3823347:383520938352093836033825Escherichia coli O26:H11 str. 11368 chromosome, complete genomeantiterminator9e-22103
NC_015690:7334786:733841373384137339285873Paenibacillus mucilaginosus KNP414 chromosome, complete genometranscriptional antiterminator, BglG2e-21102
NC_010498:3023442:303530630353063036130825Escherichia coli SMS-3-5, complete genomeputative transcriptional antiterminator3e-21102
NC_008253:2965573:297730929773092978133825Escherichia coli 536, complete genomeputative transcriptional antiterminator protein3e-21102
NC_007946:3125577:313712331371233137992870Escherichia coli UTI89, complete genomeantiterminator1e-20100
NC_007613:2699500:270940827094082710055648Shigella boydii Sb227, complete genomehypothetical protein9e-1890.9
NC_003366:64908:101425101425102009585Clostridium perfringens str. 13, complete genomeprobable transcription antiterminator7e-1374.7
NC_003366:64908:101897101897102274378Clostridium perfringens str. 13, complete genomeprobable transcription antiterminator3e-1066.2
NC_014377:1400544:1412036141203614149962961Thermosediminibacter oceani DSM 16646 chromosome, complete genomePTS system transcriptional activator3e-0652.4
NC_017179:2513804:2534847253484725369762130Clostridium difficile BI1, complete genomeputative transcription antiterminator4e-0652
NC_013315:2505792:2526835252683525289732139Clostridium difficile CD196 chromosome, complete genometranscription antiterminator4e-0652
NC_013316:2585666:2607391260739126095292139Clostridium difficile R20291, complete genomeputative transcription antiterminator4e-0652
NC_014377:1985714:1997875199787519999622088Thermosediminibacter oceani DSM 16646 chromosome, complete genometranscriptional antiterminator, BglG family5e-0652
NC_014377:532816:5554125554125573791968Thermosediminibacter oceani DSM 16646 chromosome, complete genometranscriptional antiterminator, BglG6e-0651.6