Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3721280 Shigella flexneri 2a str. 301, complete genome

Start: 3721280, End: 3722533, Length: 1254

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013421:57961:6611566115673681254Pectobacterium wasabiae WPP163, complete genomeaminotransferase class I and II0658
NC_015224:4473230:4494207449420744954031197Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,valine--pyruvate transaminase2e-178625
NC_013016:354000:3787863787863801441359Neisseria meningitidis alpha14 chromosome, complete genomevaline--pyruvate transaminase2e-109396
NC_009615:1446132:1451260145126014524621203Parabacteroides distasonis ATCC 8503 chromosome, complete genomeaminotransferase5e-1479.3
NC_010003:1724500:1726353172635317275341182Petrotoga mobilis SJ95, complete genomeputative transcriptional regulator, GntR family1e-1378.2
NC_019791:1189908:1192935119293511941101176Caldisphaera lagunensis DSM 15908 chromosome, complete genomeaspartate/tyrosine/aromatic aminotransferase3e-1273.2
NC_015474:644552:6445526445526457781227Pyrococcus sp. NA2 chromosome, complete genomehypothetical protein6e-1168.9
NC_016751:142237:1478811478811491281248Marinitoga piezophila KA3 chromosome, complete genometranscriptional regulator with HTH domain and aminotransferase domain8e-1168.6
NC_000961:172610:1820001820001832861287Pyrococcus horikoshii OT3, complete genomehypothetical protein9e-1168.6
NC_000868:196015:1960151960151972471233Pyrococcus abyssi GE5, complete genomeaminotransferase1e-1068.2
NC_008497:2038612:2049190204919020504071218Lactobacillus brevis ATCC 367, complete genomeHTH containing DNA-binding domain and MocR-like aminotransferase1e-1068.2
NC_013517:104480:1224811224811236711191Sebaldella termitidis ATCC 33386, complete genomeputative transcriptional regulator, GntR family2e-1067.4
NC_016070:719791:7333127333127344961185Thermoproteus tenax Kra 1, complete genomeaspartate aminotransferase1e-0965.1
NC_015499:1097432:1100679110067911018481170Thermodesulfobium narugense DSM 14796 chromosome, complete genomeputative transcriptional regulator, GntR family1e-0964.7
NC_009616:99647:1111721111721124071236Thermosipho melanesiensis BI429 chromosome, complete genomeGntR family transcriptional regulator2e-0963.9
NC_018720:2138180:2142647214264721439301284Bifidobacterium asteroides PRL2011 chromosome, complete genomeputative transcriptional regulator, GntR family9e-0961.6
NC_007404:1260500:1274784127478412759801197Thiobacillus denitrificans ATCC 25259, complete genomehypothetical protein9e-0961.6
NC_014926:608894:6265886265886277751188Thermovibrio ammonificans HB-1 chromosome, complete genomeaminotransferase class I and II2e-0860.8
NC_014374:344500:3692423692423704741233Acidilobus saccharovorans 345-15 chromosome, complete genomeMultiple substrate aminotransferase2e-0757.4
NC_020126:9795534:9800083980008398015191437Myxococcus stipitatus DSM 14675, complete genomeGntR family transcriptional regulator3e-0757
NC_011653:331986:3447493447493459841236Thermosipho africanus TCF52B, complete genomeaminotransferase, class I3e-0756.6
NC_013791:1507943:1525197152519715263841188Bacillus pseudofirmus OF4 chromosome, complete genomehypothetical protein4e-0756.6
NC_010634:4001154:4013950401395040151821233Yersinia pseudotuberculosis PB1/+, complete genomeaminotransferase class I and II4e-0756.2
NC_020995:2255521:2274035227403522752281194Enterococcus casseliflavus EC20, complete genomeaspartate aminotransferase6e-0755.8
NC_002570:1220180:1222169122216912233711203Bacillus halodurans C-125, complete genomeaminotransferase7e-0755.5
NC_015557:981698:1004156100415610052321077Hydrogenobaculum sp. 3684 chromosome, complete genomehistidinol-phosphate aminotransferase1e-0655.1
NC_015587:981808:1004268100426810053441077Hydrogenobaculum sp. SHO chromosome, complete genomeHistidinol-phosphate aminotransferase1e-0655.1
NC_020411:981888:1004345100434510054211077Hydrogenobaculum sp. HO, complete genomehistidinol-phosphate aminotransferase1e-0655.1
NC_006155:4062000:4073733407373340749651233Yersinia pseudotuberculosis IP 32953, complete genomeputative aminotransferase2e-0654.3
NC_010159:1071937:1080898108089810821301233Yersinia pestis Angola, complete genomeputative aspartate aminotransferase2e-0654.3
NC_004088:3923804:3935132393513239363641233Yersinia pestis KIM, complete genomeaspartate aminotransferase2e-0654.3
NC_008149:587689:5957055957055969371233Yersinia pestis Nepal516, complete genomeaminotransferase2e-0654.3
NC_010465:660207:6644496644496656811233Yersinia pseudotuberculosis YPIII, complete genomeaminotransferase class I and II2e-0654.3
NC_005810:3272765:3277007327700732782391233Yersinia pestis biovar Microtus str. 91001, complete genomeputative aminotransferase2e-0654.3
NC_003143:675622:6841756841756854071233Yersinia pestis CO92, complete genomeputative aminotransferase2e-0654.3
NC_008150:3495851:3508033350803335092651233Yersinia pestis Antiqua, complete genomeputative aminotransferase2e-0654.3
NC_009381:460358:4661314661314673631233Yersinia pestis Pestoides F chromosome, complete genomeaminotransferase2e-0654.3
NC_017154:671816:6798366798366810681233Yersinia pestis D106004 chromosome, complete genomeputative aminotransferase2e-0654.3
NC_017160:676249:6820216820216832531233Yersinia pestis D182038 chromosome, complete genomeputative aminotransferase2e-0654.3
NC_017265:3790750:3800493380049338017251233Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative aminotransferase2e-0654.3
NC_014029:729675:737695737695738672978Yersinia pestis Z176003 chromosome, complete genomeaminotransferase2e-0653.9
NC_007899:854768:9005819005819017771197Chlamydophila felis Fe/C-56, complete genomeaspartate aminotransferase3e-0653.5
NC_009512:2238437:2251294225129422524601167Pseudomonas putida F1, complete genomeputative transcriptional regulator, GntR family3e-0653.5
NC_009708:633054:6373176373176385281212Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeaspartate aminotransferase5e-0652.8
NC_017161:1:6610661077911182Hydrogenobacter thermophilus TK-6 chromosome, complete genomeclass I and II aminotransferase6e-0652.4
NC_013799:1:6549654977301182Hydrogenobacter thermophilus TK-6, complete genomeaminotransferase6e-0652.4