Pre_GI: BLASTP Hits

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Query: NC_004129:5481629:5493650 Pseudomonas fluorescens Pf-5, complete genome

Start: 5493650, End: 5494351, Length: 702

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004578:4465247:447657344765734477253681Pseudomonas syringae pv. tomato str. DC3000, complete genomeexsB protein5e-114410
NC_011770:4763506:477809447780944778768675Pseudomonas aeruginosa LESB58, complete genomehypothetical protein1e-113409
NC_008463:4566976:459123845912384591912675Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein1e-113409
NC_002516:1031386:105962210596221060296675Pseudomonas aeruginosa PAO1, complete genomehypothetical protein1e-113409
NC_018080:4465618:447930844793084479982675Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein3e-113407
NC_014394:2765261:278089227808922781569678Gallionella capsiferriformans ES-2 chromosome, complete genomeexsB protein2e-89328
NC_014733:2363838:238976323897632390440678Methylovorus sp. MP688 chromosome, complete genomeexsb protein3e-88324
NC_007947:2447635:248956124895612490250690Methylobacillus flagellatus KT, complete genomeExsB2e-87321
NC_012856:737170:762815762815763489675Ralstonia pickettii 12D chromosome 1, complete genomeexsB protein1e-85316
NC_015726:2817352:283167428316742832357684Cupriavidus necator N-1 chromosome 1, complete sequence7-cyano-7-deazaguanine synthase2e-83308
NC_007973:2888824:290632429063242907007684Ralstonia metallidurans CH34 chromosome 1, complete sequenceExsB6e-83306
NC_010513:1162232:118498111849811185673693Xylella fastidiosa M12 chromosome, complete genometranscriptional regulator2e-82305
NC_002488:1775629:177562917756291776393765Xylella fastidiosa 9a5c, complete genometranscriptional regulator3e-82304
NC_004556:1132354:114268011426801143372693Xylella fastidiosa Temecula1, complete genometranscriptional regulator8e-82303
NC_003902:3544743:356046635604663561140675Xanthomonas campestris pv. campestris str. ATCC 33913, completetranscriptional regulator8e-80296
NC_014972:3604534:362817936281793628868690Desulfobulbus propionicus DSM 2032 chromosome, complete genomepreQ(0) biosynthesis protein QueC5e-69260
NC_019673:2155669:217258621725862173287702Saccharothrix espanaensis DSM 44229 complete genome7-cyano-7-deazaguanine synthase7e-68256
NC_013729:863743:897128897128897835708Kribbella flavida DSM 17836, complete genomeexsB protein8e-68256
NC_016627:3815690:383208038320803832769690Clostridium clariflavum DSM 19732 chromosome, complete genomepreQ(0) biosynthesis protein QueC2e-67254
NC_013926:614206:627319627319628032714Aciduliprofundum boonei T469 chromosome, complete genomeexsB protein2e-66252
NC_009012:3653111:366202236620223662690669Clostridium thermocellum ATCC 27405, complete genomeexsB protein1e-65249
NC_009091:1598044:160941616094161610090675Prochlorococcus marinus str. MIT 9301, complete genomehypothetical ATPase2e-51202
NC_014935:1511835:152648915264891527166678Nitratifractor saLSUginis DSM 16511 chromosome, complete genomepreq(0) biosynthesis protein quec7e-48190
NC_013939:913890:939966939966940679714Deferribacter desulfuricans SSM1, complete genomeExsB family transcriptional regulator5e-43174
NC_012440:1874896:188437218843721885055684Persephonella marina EX-H1, complete genomeExsB protein8e-43173
NC_017187:1923733:194405919440591944745687Arcobacter butzleri ED-1, complete genomeExsB family transcriptional regulator2e-41169
NC_014541:3642241:367294736729473673609663Ferrimonas balearica DSM 9799 chromosome, complete genomepreQ(0) biosynthesis protein QueC6e-40164
NC_009714:671897:688789688789689451663Campylobacter hominis ATCC BAA-381, complete genomeExsB protein4e-38157
NC_006512:952894:965774965774966430657Idiomarina loihiensis L2TR, complete genomePredicted PP-loop superfamily ATPase5e-38157
NC_016111:639819:675035675035675706672Streptomyces cattleya NRRL 8057, complete genomeQueuosine biosynthesis protein queC8e-37153
NC_016830:530397:545819545819546523705Pseudomonas fluorescens F113 chromosome, complete genomeprotein QueC3e-35148
NC_004129:5781413:578979157897915790489699Pseudomonas fluorescens Pf-5, complete genomeexsB protein3e-35148
NC_012559:1064821:109298510929851093674690Laribacter hongkongensis HLHK9, complete genomealuminum resistance protein1e-34146
NC_012438:132456:139403139403140062660Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomeExsB protein1e-32139
NC_015587:28997:289972899729647651Hydrogenobaculum sp. SHO chromosome, complete genomeexsB protein3e-32138
NC_020411:28995:289952899529645651Hydrogenobaculum sp. HO, complete genomeexsB protein3e-32138
NC_017195:1411936:141695214169521417611660Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completeExsB protein7e-32137
NC_013887:213699:216954216954217652699Methanocaldococcus sp. FS406-22 chromosome, complete genomeexsB protein1e-31136
NC_020410:1301500:130422913042291304888660Bacillus amyloliquefaciens subsp. plantarum UCMB5036 complete7-cyano-7-deazaguanine synthase1e-31136
NC_015675:6276357:629650062965006297198699Mesorhizobium opportunistum WSM2075 chromosome, complete genomeexsB protein4e-31134
NC_014923:5721686:574182957418295742527699Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeexsB protein4e-31134
NC_019973:5650646:567078956707895671487699Mesorhizobium australicum WSM2073, complete genomequeuosine biosynthesis protein QueC4e-31134
NC_014008:2176633:218180321818032182525723Coraliomargarita akajimensis DSM 45221 chromosome, complete genomeexsB protein5e-28124
NC_013156:154233:167596167596168294699Methanocaldococcus fervens AG86, complete genomeexsB protein6e-28124
NC_015172:3160249:316024931602493160944696Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeexsB protein2e-27122
NC_007778:3974344:397933239793323980027696Rhodopseudomonas palustris HaA2, complete genomeExsB1e-25116
NC_017514:1721416:172238817223881723047660Neisseria meningitidis M01-240149 chromosome, complete genomeexsB protein7e-25114
NC_017075:1:125101251013238729Rubrivivax gelatinosus IL144, complete genome7-cyano-7-deazaguanine synthase6e-25114
NC_017516:1755500:175807917580791758738660Neisseria meningitidis H44/76 chromosome, complete genomeexsB protein2e-24112
NC_013016:419604:441009441009441668660Neisseria meningitidis alpha14 chromosome, complete genomeputative aluminum resistance protein2e-24112
NC_009256:3540531:354491835449183545652735Burkholderia vietnamiensis G4 chromosome 1, complete sequenceexsB protein2e-24112
NC_017501:1829500:183056718305671831226660Neisseria meningitidis 8013, complete genomehypothetical protein4e-24111
NC_017515:1744500:174703717470371747696660Neisseria meningitidis M04-240196 chromosome, complete genomeexsB protein4e-24111
NC_015676:1663700:168583916858391686546708Methanosalsum zhilinae DSM 4017 chromosome, complete genomeexsB protein3e-23108
NC_009053:1257302:126886312688631269531669Actinobacillus pleuropneumoniae L20, complete genomequeuosine biosynthesis protein QueC4e-23108
NC_019907:845663:846049846049846765717Liberibacter crescens BT-1 chromosome, complete genomequeuosine biosynthesis protein QueC6e-23107
NC_014539:1:113771137712081705Burkholderia sp. CCGE1003 chromosome 1, complete sequenceexsB protein3e-22105
NC_014225:1403007:142402714240271424713687Waddlia chondrophila WSU 86-1044 chromosome, complete genomeQueuosine biosynthesis protein QueC3e-21102
NC_008781:654289:674080674080674805726Polaromonas naphthalenivorans CJ2, complete genomeexsB protein1e-20100
NC_017082:532000:557758557758558486729Bradyrhizobium sp. S23321, complete genomehypothetical protein7e-2097.4
NC_015151:1872280:1895533189553318970201488Vulcanisaeta moutnovskia 768-28 chromosome, complete genomeexsB protein1e-1996.7
NC_003413:37233:558485584856570723Pyrococcus furiosus DSM 3638, complete genomesuccinoglycan biosynthesis regulator1e-1789.7
NC_011979:2969969:298744629874462988036591Geobacter sp. FRC-32, complete genomeExsB family protein2e-1479.3
NC_003106:1899691:189969118996911900299609Sulfolobus tokodaii str. 7, complete genomehypothetical protein3e-1478.6
NC_009675:4644173:467333346733334673920588Anaeromyxobacter sp. Fw109-5 chromosome, complete genomeExsB family protein7e-1477.4
NC_007494:739403:750218750218750841624Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequenceputative ExsB1e-1273.2
NC_016645:279232:299196299196299999804Pyrobaculum sp. 1860 chromosome, complete genomeExsB family protein3e-1272.4
NC_012589:783704:798735798735799376642Sulfolobus islandicus L.S.2.15, complete genomeExsB family protein3e-1272
NC_007907:761486:777423777423778085663Desulfitobacterium hafniense Y51, complete genomehypothetical protein1e-1170.1
NC_011593:2014787:202752420275242028279756Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,ExsB family protein1e-1067
NC_015424:3520783:352929035292903529685396Aeromonas veronii B565 chromosome, complete genome7-cyano-7-deazaguanine synthase 23e-1065.5
NC_015572:4916430:492072349207234921328606Methylomonas methanica MC09 chromosome, complete genomeQueuosine synthesis-like protein1e-0963.5
NC_008358:2638245:268755826875582688124567Hyphomonas neptunium ATCC 15444, complete genomehypothetical protein9e-0960.5
NC_008699:1132790:115717511571751157726552Nocardioides sp. JS614, complete genomeExsB family protein6e-0754.7
NC_007644:2318855:233130023313002331878579Moorella thermoacetica ATCC 39073, complete genomeExsB2e-0653.1
NC_017219:2014605:202734220273422027755414Bifidobacterium longum subsp. infantis ATCC 15697, complete genomehypothetical protein2e-0652.8