Pre_GI Gene

Some Help

Host: NC_009012 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009012:3653111 Clostridium thermocellum ATCC 27405, complete genome

Host Lineage: Clostridium thermocellum; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a well studied producer of endoglucanase and several restriction endonucleases. Thermophilic cellulose degrading bacterium. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a thermophilic anaerobe that produces an extracellular enzyme system capable of degrading crystalline cellulose to soluble sugars that are further utilized as the carbon source for growth.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
36531113654046936hypothetical protein
36541933655158966glycosyl transferase family 2QuickGO ontologyBLASTP
36552873655637351hypothetical proteinBLASTP
36556513656349699glycosyl transferase family 2QuickGO ontologyBLASTP
36565503657392843Diaminopimelate epimeraseQuickGO ontologyBLASTP
365748236587141233aminotransferase class I and IIQuickGO ontologyBLASTP
36588253659760936cell envelope-related transcriptional attenuatorQuickGO ontologyBLASTP
365990436608909872-hydroxyglutaryl-CoA dehydratase D-componentQuickGO ontologyBLASTP
36609603661730771putative CoA-substrate-specific enzyme activaseQuickGO ontologyBLASTP
36620223662690669exsB proteinQuickGO ontologyBLASTP
366272236631053846-pyruvoyl tetrahydropterin synthase and hypothetical proteinQuickGO ontologyBLASTP
36631313663763633Radical SAMQuickGO ontologyBLASTP
36637693664338570phage SPO1 DNA polymerase-related proteinQuickGO ontologyBLASTP
36643173664895579Uracil-DNA glycosylase superfamilyQuickGO ontologyBLASTP
36654913667011152116S ribosomal RNAQuickGO ontologyBLASTP
3667119366719476tRNA-AlaQuickGO ontologyBLASTP
36673943670301290823S ribosomal RNAQuickGO ontologyBLASTP
367039136705071175S ribosomal RNAQuickGO ontologyBLASTP
3670515367059076tRNA-AsnQuickGO ontology
36709533671717765UBATHIF-type NADFAD binding foldQuickGO ontologyBLASTP
36719053672384480hypothetical proteinBLASTP
36727023673694993glycosidase PH1107-relatedQuickGO ontologyBLASTP
367375336748021050Nucleotidyl transferaseQuickGO ontologyBLASTP
367497136761461176glycosyl transferase group 1QuickGO ontologyBLASTP
367614336771561014hypothetical proteinBLASTP