Pre_GI: BLASTP Hits

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Query: NC_004129:3965947:3975468 Pseudomonas fluorescens Pf-5, complete genome

Start: 3975468, End: 3976445, Length: 978

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015660:1988000:200978320097832010748966Geobacillus thermoglucosidasius C56-YS93 chromosome, completeNitrilase3e-51202
NC_014307:1855356:1882034188203418830501017Ralstonia solanacearum CFBP2957 chromosome, complete genomenitrilase7e-43174
NC_014841:41773:5817858178591791002Pantoea sp. At-9b plasmid pPAT9B04, complete sequenceNitrilase/cyanide hydratase and apolipoprotein N-acyltransferase1e-42173
NC_006625:144929:1529221529221539231002Klebsiella pneumoniae NTUH-K2044 plasmid pK2044, complete sequencecarbon-nitrogen hydrolase2e-42173
NC_013524:314814:3346423346423357331092Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genomeNitrilase/cyanide hydratase and apolipoprotein N- acyltransferase4e-41168
NC_014931:3642779:3645846364584636468801035Variovorax paradoxus EPS chromosome, complete genomeAliphatic nitrilase5e-41168
NC_012724:147454:163290163290164213924Burkholderia glumae BGR1 chromosome 1, complete genomeNitrilase/cyanide hydratase and apolipoprotein N-acyltransferase9e-41167
NC_011000:2831183:2843804284380428448531050Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative nitrilase2e-40166
NC_011758:369704:7191719182671077Methylobacterium chloromethanicum CM4 plasmid pMCHL01, completeNitrilase/cyanide hydratase and apolipoprotein N-acyltransferase6e-40164
NC_015684:1343251:1360478136047813615421065Oligotropha carboxidovorans OM5 chromosome, complete genomenitrilase3e-39162
NC_011386:2762886:2762886276288627639501065Oligotropha carboxidovorans OM5, complete genomealiphatic nitrilase3e-39162
NC_009511:4582188:4596845459684545979061062Sphingomonas wittichii RW1 chromosome, complete genomenitrilase4e-39162
NC_007802:3807500:3818178381817838192031026Jannaschia sp. CCS1, complete genomeNitrilase5e-39161
NC_013159:2098500:209851620985162099511996Saccharomonospora viridis DSM 43017, complete genomepredicted amidohydrolase3e-38159
NC_008596:4196194:421735142173514218319969Mycobacterium smegmatis str. MC2 155, complete genomealiphatic nitrilase4e-36152
NC_004578:212468:2124682124682135111044Pseudomonas syringae pv. tomato str. DC3000, complete genomenitrilase, putative5e-36152
NC_013740:1081454:108746410874641088387924Acidaminococcus fermentans DSM 20731, complete genomeNitrilase/cyanide hydratase and apolipoprotein N- acyltransferase8e-35147
NC_014839:12519:342173421735164948Pantoea sp. At-9b plasmid pPAT9B02, complete sequenceNitrilase/cyanide hydratase and apolipoprotein N-acyltransferase2e-23109
NC_020453:3179346:3185091318509131868301740Agromonas oligotrophica S58 DNA, complete genomeputative nitrilase/cyanide hydratase family protein3e-1273.2
NC_018645:247917:247917247917248909993Desulfobacula toluolica Tol2, complete genomenitrilase1e-1170.5
NC_014103:2635695:263758126375812638375795Bacillus megaterium DSM319 chromosome, complete genomecarbon-nitrogen family hydrolase3e-1066.2
NC_007712:1893066:189306618930661893881816Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein8e-1064.7
NC_011831:853433:874690874690875577888Chloroflexus aggregans DSM 9485, complete genomeNitrilase/cyanide hydratase and apolipoprotein N-acyltransferase2e-0963.5
NC_009654:3215205:321520532152053216083879Marinomonas sp. MWYL1, complete genomeNitrilase/cyanide hydratase and apolipoprotein N-acyltransferase2e-0963.5
NC_007645:2408125:240812524081252409027903Hahella chejuensis KCTC 2396, complete genomepredicted amidohydrolase2e-0963.2
NC_015376:2241000:2252849225284922542341386Burkholderia gladioli BSR3 chromosome chromosome 2, completeshikimate transporter3e-0963.2
NC_014829:4565467:457862645786264579504879Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeN-carbamoylputrescine amidase8e-0961.6
NC_020291:2701149:271484027148402715718879Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeN-carbamoylputrescine amidase7e-0961.6
NC_012988:4292815:431601443160144316916903Methylobacterium extorquens DM4, complete genomeN-carbamyl-D-amino acid amidohydrolase1e-0861.2
NC_013421:163114:180291180291181175885Pectobacterium wasabiae WPP163, complete genomeN-carbamoylputrescine amidase2e-0860.1
NC_007494:739403:767805767805768647843Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequencePredicted amidohydrolase2e-0860.1
NC_007604:2213659:222902322290232229910888Synechococcus elongatus PCC 7942, complete genomehypothetical protein4e-0859.3
NC_014500:177824:197176197176198060885Dickeya dadantii 3937 chromosome, complete genomeputative N-carbamoylputrescine amidase5e-0858.9
NC_006576:2073163:208717420871742088007834Synechococcus elongatus PCC 6301, complete genomehypothetical protein5e-0858.9
NC_009050:427000:451170451170452012843Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequenceNitrilase/cyanide hydratase and apolipoprotein N-acyltransferase4e-0858.9
NC_008150:361224:387822387822388706885Yersinia pestis Antiqua, complete genomeputative carbon-nitrogen hydrolase6e-0858.5
NC_009381:627685:652160652160653044885Yersinia pestis Pestoides F chromosome, complete genomecarbon-nitrogen hydrolase6e-0858.5
NC_014029:1001000:102553710255371026421885Yersinia pestis Z176003 chromosome, complete genomeputative carbon-nitrogen hydrolase6e-0858.5
NC_017154:941065:967682967682968566885Yersinia pestis D106004 chromosome, complete genomeputative carbon-nitrogen hydrolase6e-0858.5
NC_017160:945176:969657969657970541885Yersinia pestis D182038 chromosome, complete genomeputative carbon-nitrogen hydrolase6e-0858.5
NC_017168:50391:749547495475838885Yersinia pestis A1122 chromosome, complete genomeputative carbon-nitrogen hydrolase6e-0858.5
NC_017265:854492:878968878968879852885Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative carbon-nitrogen hydrolase6e-0858.5
NC_010465:933488:958066958066958950885Yersinia pseudotuberculosis YPIII, complete genomeN-carbamoylputrescine amidase1e-0757.4
NC_010681:1202929:122609812260981226526429Burkholderia phytofirmans PsJN chromosome 1, complete sequence2e-0757
NC_010729:265791:275754275754276632879Porphyromonas gingivalis ATCC 33277, complete genomehydrolase4e-0755.8
NC_016610:2489415:248941524894152490293879Tannerella forsythia ATCC 43037 chromosome, complete genomehydrolase4e-0755.8
NC_002950:155873:165837165837166715879Porphyromonas gingivalis W83, complete genomehydrolase, carbon-nitrogen family4e-0755.8
NC_010501:1286971:130410713041071305003897Pseudomonas putida W619, complete genomeNitrilase/cyanide hydratase and apolipoprotein N-acyltransferase4e-0755.8
NC_015571:440605:450568450568451446879Porphyromonas gingivalis TDC60, complete genomecarbon-nitrogen family hydrolase5e-0755.5
NC_009615:1354122:136940613694061370281876Parabacteroides distasonis ATCC 8503 chromosome, complete genomebeta-ureidopropionase6e-0755.1
NC_007498:134442:136086136086136898813Pelobacter carbinolicus DSM 2380, complete genomeputative amidase8e-0754.7
NC_010505:4676403:469882146988214699666846Methylobacterium radiotolerans JCM 2831, complete genomeNitrilase/cyanide hydratase and apolipoprotein N-acyltransferase2e-0653.9
NC_014033:1691822:169405716940571694941885Prevotella ruminicola 23 chromosome, complete genomecarbon-nitrogen family hydrolase3e-0653.1
NC_007677:1872459:188350818835081884353846Salinibacter ruber DSM 13855, complete genomehydrolase, carbon-nitrogen family6e-0652