Pre_GI: BLASTP Hits

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Query: NC_003366:2494907:2501696 Clostridium perfringens str. 13, complete genome

Start: 2501696, End: 2502226, Length: 531

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008262:2379144:238227423822742382804531Clostridium perfringens SM101, complete genomeputative sporulation protein YyaC9e-96348
NC_008261:2708929:271571627157162716246531Clostridium perfringens ATCC 13124, complete genomeputative sporulation protein YyaC4e-95346
NC_021182:4427468:443635844363584436900543Clostridium pasteurianum BC1, complete genomeputative sporulation protein YyaC5e-62236
NC_009495:183767:198500198500199024525Clostridium botulinum A str. ATCC 3502 chromosome, complete genomehypothetical protein2e-54211
NC_010723:485874:500203500203500724522Clostridium botulinum E3 str. Alaska E43, complete genomeputative sporulation protein YyaC2e-49194
NC_020291:684500:699078699078699614537Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomesporulation protein YyaC4e-48190
NC_009633:760872:762043762043762576534Alkaliphilus metalliredigens QYMF chromosome, complete genomehypothetical protein1e-36152
NC_004722:5381208:540185554018555402451597Bacillus cereus ATCC 14579, complete genomehypothetical protein4e-32137
NC_005945:5202176:521884552188455219441597Bacillus anthracis str. Sterne, complete genomehypothetical protein2e-31135
NC_007530:5197854:521760052176005218196597Bacillus anthracis str. 'Ames Ancestor', complete genomehypothetical protein2e-31135
NC_003997:5200805:521747452174745218070597Bacillus anthracis str. Ames, complete genomehypothetical protein2e-31135
NC_012659:5200831:521750052175005218096597Bacillus anthracis str. A0248, complete genomeputative sporulation protein YyaC2e-31135
NC_016779:5189139:521308752130875213683597Bacillus cereus F837/76 chromosome, complete genomeSpore protease GPR related protein2e-31135
NC_017200:5325977:534567253456725346268597Bacillus thuringiensis serovar finitimus YBT-020 chromosome,hypothetical protein1e-31135
NC_006274:5267585:529109652910965291692597Bacillus cereus E33L, complete genomehypothetical protein2e-31134
NC_016771:5191937:521163852116385212234597Bacillus cereus NC7401, complete genomehypothetical protein5e-31133
NC_011658:5239509:525921152592115259807597Bacillus cereus AH187 chromosome, complete genomehypothetical protein5e-31133
NC_014098:3372000:337207033720703372702633Bacillus tusciae DSM 2912 chromosome, complete genomesporulation protein YyaC7e-28123
NC_009328:3504454:353946735394673540090624Geobacillus thermodenitrificans NG80-2 chromosome, complete genomehypothetical protein5e-28123
NC_018664:3009166:303509430350943035705612Clostridium acidurici 9a chromosome, complete genomeputative sporulation protein YyaC1e-25115
NC_013406:7092510:710165971016597102264606Paenibacillus sp. Y412MC10 chromosome, complete genomesporulation protein YyaC1e-25115
NC_020134:2772500:279049827904982791070573Clostridium stercorarium subsp. stercorarium DSM 8532, completesporulation protein YyaC1e-25115
NC_015690:8645500:865168286516828652296615Paenibacillus mucilaginosus KNP414 chromosome, complete genomehypothetical protein8e-25112
NC_016935:8716704:872691187269118727525615Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein9e-25112
NC_010337:1051425:107379610737961074458663Heliobacterium modesticaldum Ice1, complete genomehypothetical protein3e-24110
NC_015275:1223088:122308812230881223657570Clostridium lentocellum DSM 5427 chromosome, complete genomesporulation protein YyaC1e-23109
NC_010516:3903867:394754239475423948123582Clostridium botulinum B1 str. Okra, complete genomehypothetical protein1e-22105
NC_015519:2739347:274492627449262745492567Tepidanaerobacter sp. Re1 chromosome, complete genomesporulation protein YyaC3e-21101
NC_006177:3549467:355092535509253551476552Symbiobacterium thermophilum IAM 14863, complete genomehypothetical protein3e-21101
NC_016593:1092812:109700910970091097560552Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completehypothetical protein3e-1787.8
NC_006510:1014500:101837810183781018929552Geobacillus kaustophilus HTA426, complete genomehypothetical protein3e-1787.8
NC_020210:901240:905422905422905973552Geobacillus sp. GHH01, complete genomeDUF1256 family protein9e-1683.2
NC_021184:148000:150681150681151229549Desulfotomaculum gibsoniae DSM 7213, complete genomeputative sporulation protein YyaC5e-1580.5
NC_020292:110284:125756125756126235480Clostridium saccharoperbutylacetonicum N1-4(HMT) plasmid Csp_135p,hypothetical protein DUF12562e-1065.1
NC_006177:520055:539921539921540538618Symbiobacterium thermophilum IAM 14863, complete genomehypothetical protein9e-0856.2