Pre_GI: BLASTP Hits

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Query: NC_003062:50756:64853 Agrobacterium tumefaciens str. C58 chromosome circular, complete

Start: 64853, End: 66085, Length: 1233

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003304:51048:6505465054662861233Agrobacterium tumefaciens str. C58 chromosome circular, completetranscriptional regulator, ROK family0766
NC_015183:51500:6543265432666641233Agrobacterium sp. H13-3 chromosome, complete genomeROK family transcriptional regulator0733
NC_012997:4545875:4544672454467245459041233Teredinibacter turnerae T7901, complete genomeROK family protein6e-33142
NC_019842:1847081:1859562185956218607161155Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,hypothetical protein5e-22105
NC_009725:1787262:1800029180002918011831155Bacillus amyloliquefaciens FZB42, complete genomeXylR5e-22105
NC_004088:2491303:2512443251244325135971155Yersinia pestis KIM, complete genometranscriptional regulator3e-21103
NC_014169:2353711:2355560235556023567651206Bifidobacterium longum subsp. longum JDM301 chromosome, completeROK family protein3e-21103
NC_010465:2383219:2404312240431224054241113Yersinia pseudotuberculosis YPIII, complete genomeROK family protein3e-21103
NC_009381:1205900:1226956122695612280681113Yersinia pestis Pestoides F chromosome, complete genometranscriptional regulatory protein3e-21103
NC_014029:2285323:2306431230643123075431113Yersinia pestis Z176003 chromosome, complete genomeputative transcriptional regulatory protein3e-21103
NC_017168:3433804:3454739345473934558511113Yersinia pestis A1122 chromosome, complete genometranscriptional regulator3e-21103
NC_017265:2213500:2234107223410722352221116Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,transcriptional regulator3e-21103
NC_020410:1781884:1797417179741717985711155Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completetranscriptional regulator2e-21103
NC_002678:7004370:7026272702627270274381167Mesorhizobium loti MAFF303099, complete genometranscriptional regulator2e-21103
NC_020272:2077795:2101089210108921022431155Bacillus amyloliquefaciens IT-45, complete genomehypothetical protein8e-21101
NC_005773:5149768:5163441516344151645711131Pseudomonas syringae pv. phaseolicola 1448A, complete genomeROK family protein4e-2099.4
NC_020244:1875834:1896395189639518975581164Bacillus subtilis XF-1, complete genomexylose repressor4e-2099.4
NC_014479:1831404:1844341184434118454951155Bacillus subtilis subsp. spizizenii str. W23 chromosome, completenegative transcriptional regulator5e-2099
NC_017195:1852935:1871695187169518728491155Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completexylose repressor8e-2098.6
NC_017191:1568369:1595773159577315969271155Bacillus amyloliquefaciens XH7 chromosome, complete genometranscriptional regulator/sugar kinase1e-1998.2
NC_017190:1832402:1847161184716118483151155Bacillus amyloliquefaciens LL3 chromosome, complete genomeXylose repressor1e-1998.2
NC_017188:1567000:1594469159446915956231155Bacillus amyloliquefaciens TA208 chromosome, complete genomenegative transcriptional regulator1e-1998.2
NC_016047:1978312:1990871199087119920251155Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completexylose repressor2e-1997.1
NC_006087:28490:5194651946532291284Leifsonia xyli subsp. xyli str. CTCB07, complete genometranscriptional regulator, ROK family2e-1790.5
NC_012914:5938566:5942383594238359435461164Paenibacillus sp. JDR-2, complete genomeROK family protein2e-1584
NC_014831:1818968:1836995183699518382841290Thermaerobacter marianensis DSM 12885 chromosome, complete genomeROK family protein3e-1583.6
NC_007644:416000:4239874239874252191233Moorella thermoacetica ATCC 39073, complete genomeROK7e-1582
NC_019896:2158223:2178095217809521791471053Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeXylose repressor9e-1581.6
NC_007333:1743890:1858297185829718595471251Thermobifida fusca YX, complete genomeputative xylose repressor8e-1478.6
NC_013714:2350749:2355017235501723561891173Bifidobacterium dentium Bd1, complete genomeN-acetylglucosamine repressor2e-1377
NC_011898:3973627:3992304399230439935031200Clostridium cellulolyticum H10, complete genomeROK family protein3e-1376.6
NC_000964:1873398:1889720188972018907721053Bacillus subtilis subsp. subtilis str. 168, complete genometranscriptional regulator4e-1376.3
NC_013526:835117:8411018411018423571257Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeROK family protein9e-1375.1
NC_013235:1938889:1942767194276719439271161Nakamurella multipartita DSM 44233, complete genomeROK family protein1e-1274.7
NC_003888:6568000:6588242658824265894531212Streptomyces coelicolor A3(2), complete genomeprobable transcriptional repressor protein1e-1274.3
NC_003155:2730469:2736105273610527373041200Streptomyces avermitilis MA-4680, complete genomeROK-family transcriptional regulator3e-1273.2
NC_003155:6295078:6317639631763963189251287Streptomyces avermitilis MA-4680, complete genomeROK-family transcriptional regulator5e-1272.8
NC_014931:6203872:6243214624321462443711158Variovorax paradoxus EPS chromosome, complete genomeROK family protein4e-1272.8
NC_013929:2375613:2383101238310123843121212Streptomyces scabiei 87.22 chromosome, complete genometranscriptional repressor7e-1272
NC_016114:1435436:1441008144100814422401233Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeROK family protein1e-1170.9
NC_015953:5908467:5921153592115359223521200Streptomyces sp. SirexAA-E chromosome, complete genomeROK family protein2e-1170.5
NC_013739:5705325:5710409571040957116231215Conexibacter woesei DSM 14684, complete genomeROK family protein2e-1170.5
NC_011899:2481229:2483324248332424845141191Halothermothrix orenii H 168, complete genomeROK family protein3e-1170.1
NC_010572:1748668:1754399175439917555981200Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative ROK-family transcriptional regulator1e-1068.2
NC_021177:6662668:6675017667501766762281212Streptomyces fulvissimus DSM 40593, complete genomeROK family protein1e-1068.2
NC_014550:615609:6267256267256279541230Arthrobacter arilaitensis Re117, complete genomeputative transcriptional regulator1e-1068.2
NC_011899:86800:8898088980901161137Halothermothrix orenii H 168, complete genomeROK family protein3e-1066.6
NC_018750:6315802:6331621633162163328411221Streptomyces venezuelae ATCC 10712, complete genomeN-acetylmannosamine kinase3e-1066.6
NC_010320:143109:1593611593611605631203Thermoanaerobacter sp. X514 chromosome, complete genomeROK family protein5e-1065.9
NC_014538:187747:1992261992262004281203Thermoanaerobacter sp. X513 chromosome, complete genomeROK family protein5e-1065.9
NC_016633:1898234:1903146190314619043481203Sphaerochaeta pleomorpha str. Grapes chromosome, complete genometranscriptional regulator/sugar kinase5e-1065.9
NC_017214:54558:5702657026582521227Bifidobacterium animalis subsp. lactis BB-12 chromosome, completeTranscriptional repressor1e-0964.3
NC_017215:1361822:1364290136429013655161227Bifidobacterium animalis subsp. lactis CNCM I-2494 chromosome,Transcriptional repressor1e-0964.3
NC_012814:1357070:1359445135944513606501206Bifidobacterium animalis subsp. lactis Bl-04, complete genomeROK family transcriptional regulator1e-0964.3
NC_012815:1357003:1359378135937813605831206Bifidobacterium animalis subsp. lactis DSM 10140, complete genomeROK family transcriptional regulator1e-0964.3
NC_011835:965977:9683529683529695571206Bifidobacterium animalis subsp. lactis AD011 chromosome, completeRok (NagC/XylR) family transcriptional repressor1e-0964.3
NC_017216:1356930:1359305135930513605101206Bifidobacterium animalis subsp. lactis BLC1, complete genometranscriptional regulator, ROK family protein1e-0964.3
NC_017217:1362573:1364948136494813661531206Bifidobacterium animalis subsp. lactis V9 chromosome, completeROK family transcriptional regulator1e-0964.3
NC_015663:3466471:3481170348117034823421173Enterobacter aerogenes KCTC 2190 chromosome, complete genometranscriptional regulator3e-0963.5
NC_014829:1154520:1167868116786811690911224Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeROK family protein7e-0962
NC_015519:801929:8051658051658063551191Tepidanaerobacter sp. Re1 chromosome, complete genomeglucokinase1e-0861.2
NC_013929:6371019:6371019637101963722271209Streptomyces scabiei 87.22 chromosome, complete genomesugar kinase3e-0860.1
NC_015520:2859820:2875564287556428767811218Mahella australiensis 50-1 BON chromosome, complete genomeROK family protein3e-0860.1
NC_012669:1700626:1704617170461717058491233Beutenbergia cavernae DSM 12333, complete genomeROK family protein4e-0859.7
NC_015634:359500:4080534080534091771125Bacillus coagulans 2-6 chromosome, complete genomeNagC protein7e-0858.9
NC_014838:175939:1995041995042006371134Pantoea sp. At-9b plasmid pPAT9B01, complete sequenceROK family protein2e-0757
NC_015434:3507059:3533067353306735343261260Verrucosispora maris AB-18-032 chromosome, complete genomerok family protein3e-0756.6
NC_014837:33014:3387133871350041134Pantoea sp. At-9b chromosome, complete genomeROK family protein5e-0755.8
NC_014158:233733:2325382325382338361299Tsukamurella paurometabola DSM 20162 chromosome, complete genomeROK family protein1e-0654.7
NC_014212:670996:6820136820136831611149Meiothermus silvanus DSM 9946 chromosome, complete genomeROK family protein1e-0654.7
NC_014246:611275:6318586318586331861329Mobiluncus curtisii ATCC 43063 chromosome, complete genometranscriptional repressor1e-0654.7
NC_010175:1531212:1538807153880715400331227Chloroflexus aurantiacus J-10-fl, complete genomeROK family protein2e-0654.3
NC_010003:225420:2312382312382324341197Petrotoga mobilis SJ95, complete genomeROK family protein5e-0652.8
NC_016111:5181475:5180324518032451814781155Streptomyces cattleya NRRL 8057, complete genomeglucokinase6e-0652.4