Pre_GI: BLASTP Hits

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Query: NC_016822:1304398:1309085 Shigella sonnei 53G, complete genome

Start: 1309085, End: 1309828, Length: 744

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:1320287:132624113262411326984744Shigella sonnei Ss046, complete genomehypothetical protein5e-146516
NC_011415:2153243:216858721685872169330744Escherichia coli SE11 chromosome, complete genomehypothetical protein2e-145514
NC_008258:1934479:195197519519751952718744Shigella flexneri 5 str. 8401, complete genomehypothetical protein2e-145514
NC_006155:2378526:239714523971452397948804Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein5e-123440
NC_004088:2491303:249050324905032491306804Yersinia pestis KIM, complete genomehypothetical protein5e-123440
NC_010465:2383219:238241923824192383222804Yersinia pseudotuberculosis YPIII, complete genomemethyltransferase5e-123440
NC_008150:1593500:161249116124911613294804Yersinia pestis Antiqua, complete genomehypothetical protein5e-123440
NC_010634:2297000:231504123150412315844804Yersinia pseudotuberculosis PB1/+, complete genomemethyltransferase5e-123440
NC_003143:2309500:232817823281782328981804Yersinia pestis CO92, complete genomehypothetical protein5e-123440
NC_009381:1205900:120510012051001205903804Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein5e-123440
NC_014029:2285323:228452322845232285326804Yersinia pestis Z176003 chromosome, complete genomehypothetical protein5e-123440
NC_017160:2212806:221200622120062212809804Yersinia pestis D182038 chromosome, complete genomehypothetical protein5e-123440
NC_017168:3433804:343300434330043433807804Yersinia pestis A1122 chromosome, complete genomehypothetical protein5e-123440
NC_004547:2810151:282802628280262828805780Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein1e-117422
NC_013416:1783349:178997017899701790695726Aggregatibacter actinomycetemcomitans D11S-1, complete genomemethyltransferase, putative3e-98358
NC_016513:16721:209662096621691726Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completemethyltransferase1e-97355
NC_009348:3029963:306585330658533066596744Aeromonas salmonicida subsp. salmonicida A449, complete genomemethyltransferase, putative5e-93340
NC_007517:2870657:287472328747232875526804Geobacter metallireducens GS-15, complete genomemethyltransferase8e-78290
NC_014973:54449:720757207572809735Geobacter sp. M18 chromosome, complete genomemethyltransferase5e-77287
NC_012560:1322000:134591713459171346660744Azotobacter vinelandii DJ, complete genomemethyltransferase8e-74276
NC_021150:1322000:134592913459291346672744Azotobacter vinelandii CA6, complete genomemethyltransferase8e-74276
NC_007645:2294553:231133023113302312076747Hahella chejuensis KCTC 2396, complete genomeSAM-dependent methyltransferase2e-68259
NC_013851:859396:858668858668859405738Allochromatium vinosum DSM 180 chromosome, complete genomemethyltransferase1e-57223
NC_014551:1872000:189099418909941891722729Bacillus amyloliquefaciens DSM 7, complete genomemethyltransferase8e-34144
NC_015572:1252000:126533912653391266067729Methylomonas methanica MC09 chromosome, complete genometype 12 methyltransferase6e-26117
NC_010634:2124185:214469021446902145415726Yersinia pseudotuberculosis PB1/+, complete genomemethyltransferase type 122e-22105
NC_006155:2208686:222836622283662229091726Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein2e-22105
NC_014010:1489910:150667215066721507376705Candidatus Puniceispirillum marinum IMCC1322 chromosome, completemethyltransferase domain protein2e-1892.8
NC_016616:2219486:221948622194862220172687Dechlorosoma suillum PS chromosome, complete genomemethylase involved in ubiquinone/menaquinone biosynthesis2e-0653.1