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Query: NC_015848:1105892:1113349 Mycobacterium canettii CIPT 140010059, complete genome

Start: 1113349, End: 1115916, Length: 2568

Host Lineage: Mycobacterium canettii; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: The Republic of Djibouti, Africa appears to be an exceptional place in terms of tuberculosis (TB) caused by Mycobacterium canettii, a highly unusual tubercle bacillus with unusual smooth colony morphology (STB) related to the M. tuberculosis complex (MTBC). M. canettii was first isolated from a 20-year-old French farmer suffering from pulmonary tuberculosis by G. Canetti in 1969. Since then, this strain has been isolated on rare occasions from patients who lived or were presumably infected in East Africa. It tends to preferentially affect children and foreigners in the Horn of Africa. M. canettii, a possible ancestor of the MTBC, is found almost exclusively in the Horn of Africa where TB is thought to have emerged about 40 000 years ago, coinciding with the expansion of human population out of Africa. The geographical restriction of M. canettii isolates and contrasting genetic diversity are characteristics compatible with a non-human reservoir. With the larger pan-genome reflecting the ancestral, wider gene pool of tubercle bacilli, their lower virulence and faster growth, especially at temperatures below 37 degrees C, plausibly reflecting broader environmental adaptability, STB strains might thus come nearer to the as-yet-unknown missing link between the obligate pathogen M. tuberculosis and environmental mycobacteria (adapted from PMIDs 20831613 and 23291586). Mycobacteria have an unusual outer membrane approximately 8nm thick, despite being considered Gram-positive. The outer membrane and the mycolic acid-arabinoglactan-peptidoglycan polymer form the cell wall, which constitutes an efficient permeability barrier in conjunction with the cell inner membrane.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016804:1095846:1103310110331011058772568Mycobacterium bovis BCG str. Mexico chromosome, complete genomeputative adhesion component transport transmembrane protein ABC transporter01504
NC_012207:1097228:1104692110469211072592568Mycobacterium bovis BCG str. Tokyo 172, complete genomeputative adhesion component transport transmembrane protein ABC transporter01504
NC_008769:1125567:1133031113303111355982568Mycobacterium bovis BCG str. Pasteur 1173P2, complete genomeputative adhesion component transport transmembrane protein ABC transporter01504
NC_009525:1096386:1103850110385011064172568Mycobacterium tuberculosis H37Ra, complete genomeadhesion component ABC transporter permease protein01502
NC_009565:1098847:1106310110631011088772568Mycobacterium tuberculosis F11, complete genomehypothetical adhesion component transport transmembrane protein ABC transporter01502
NC_000962:1095078:1102542110254211051092568Mycobacterium tuberculosis H37Rv, complete genomePROBABLE ADHESION COMPONENT TRANSPORT TRANSMEMBRANE PROTEIN ABC TRANSPORTER01502
NC_012943:3299744:3306858330685833094252568Mycobacterium tuberculosis KZN 1435 chromosome, complete genomehypothetical protein01502
NC_016768:3296478:3303592330359233061592568Mycobacterium tuberculosis KZN 4207 chromosome, complete genomeadhesion component transport transmembrane protein01502
NC_002755:1095105:1102581110258111051482568Mycobacterium tuberculosis CDC1551, complete genomehypothetical protein01499
NC_017026:1095753:1104283110428311057911509Mycobacterium tuberculosis RGTB327 chromosome, complete genomehypothetical protein0884
NC_002945:1095337:1102993110299311042641272Mycobacterium bovis AF2122/97, complete genomeadhesion component transport transmembrane protein ABC transporter0755
NC_002945:1095337:1104265110426511055601296Mycobacterium bovis AF2122/97, complete genomeadhesion component transport transmembrane protein ABC transporter0749
NC_017026:1095753:110345111034511104254804Mycobacterium tuberculosis RGTB327 chromosome, complete genomeadhesion component transport transmembrane protein6e-124445
NC_013939:1902397:1899903189990319024042502Deferribacter desulfuricans SSM1, complete genomeABC transporter permease2e-52208
NC_009348:2738742:2740116274011627424642349Aeromonas salmonicida subsp. salmonicida A449, complete genomeABC-type transporter, permease protein2e-42175
NC_015733:3595882:3600131360013136025932463Pseudomonas putida S16 chromosome, complete genomehypothetical protein5e-27123
NC_011662:2402408:2420085242008524213111227Thauera sp. MZ1T, complete genomeprotein of unknown function DUF2142e-23111
NC_018750:3141196:3148639314863931511702532Streptomyces venezuelae ATCC 10712, complete genomeputative ABC transporter integral membrane protein2e-1998.2
NC_013929:8474195:8503623850362385061332511Streptomyces scabiei 87.22 chromosome, complete genomeABC transporter5e-1997.1
NC_007492:2310793:2311467231146723139142448Pseudomonas fluorescens PfO-1, complete genomeProtein of unknown function DUF2143e-1687.8
NC_008700:3514745:3518305351830535209232619Shewanella amazonensis SB2B, complete genomeputative ABC transport system permease protein2e-1585.5
NC_013739:2057781:2061313206131320638502538Conexibacter woesei DSM 14684, complete genomeprotein of unknown function DUF2143e-1274.7
NC_013595:1851226:1858595185859518611052511Streptosporangium roseum DSM 43021, complete genomeABC-type transport system involved in lysophospholipase L1 biosynthesis permease component-like protein6e-1067
NC_009952:3522370:3523424352342435258262403Dinoroseobacter shibae DFL 12, complete genomepredicted permease FtsX3e-0964.7
NC_015957:8816355:8828383882838388309142532Streptomyces violaceusniger Tu 4113 chromosome, complete genomehypothetical protein8e-0859.7
NC_014168:1294000:1322125132212513246142490Segniliparus rotundus DSM 44985 chromosome, complete genomehypothetical protein1e-0759.7
NC_015740:2614317:2643155264315526443751221Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completelipoprotein release ABC transporter permease2e-0758.5