Pre_GI: BLASTP Hits

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Query: NC_010658:4494103:4508237 Shigella boydii CDC 3083-94, complete genome

Start: 4508237, End: 4508698, Length: 462

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017501:96211:113718113718114176459Neisseria meningitidis 8013, complete genomeaspartate carbamoyltransferase4e-37153
NC_011035:1974489:199278519927851993243459Neisseria gonorrhoeae NCCP11945 chromosome, complete genomeaspartate carbamoyltransferase2e-36151
NC_017505:96293:114015114015114473459Neisseria meningitidis alpha710 chromosome, complete genomeaspartate carbamoyltransferase4e-37153
NC_009697:3409185:342610734261073426547441Clostridium botulinum A str. ATCC 19397 chromosome, completeaspartate carbamoyltransferase3e-1787
NC_002528:404545:408379408379408843465Buchnera aphidicola str. APS (Acyrthosiphon pisum), completeaspartate carbamoyltransferase regulatory chain9e-52202
NC_008767:84950:103350103350103808459Neisseria meningitidis FAM18, complete genomeaspartate carbamoyltransferase regulatory chain4e-37153
NC_015424:4251369:425861342586134259077465Aeromonas veronii B565 chromosome, complete genomeaspartate carbamoyltransferase regulatory chain2e-47187
NC_002754:513790:534485534485534976492Sulfolobus solfataricus P2, complete genomeAspartate carbamoyltransferase regulatory chain (pyrI)6e-2096.3
NC_012947:3947238:395938439593843959845462Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeaspartate carbamoyltransferase regulatory subunit2e-86317
NC_012967:4449576:445426344542634454724462Escherichia coli B str. REL606 chromosome, complete genomeaspartate carbamoyltransferase regulatory subunit2e-86317
NC_000913:4462782:446900944690094469470462Escherichia coli K12, complete genomeaspartate carbamoyltransferase regulatory subunit2e-86317
NC_017511:1883663:190128319012831901741459Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomeaspartate carbamoyltransferase regulatory subunit2e-36151
NC_012622:1395601:139560113956011396080480Sulfolobus islandicus Y.G.57.14 chromosome, complete genomeaspartate carbamoyltransferase regulatory subunit3e-1994
NC_007613:4217557:425095242509524251413462Shigella boydii Sb227, complete genomeaspartate carbamoyltransferase regulatory subunit2e-86317
NC_012623:1141951:116201211620121162491480Sulfolobus islandicus Y.N.15.51 chromosome, complete genomeaspartate carbamoyltransferase regulatory subunit3e-1994
NC_011742:4795733:480042048004204800881462Escherichia coli S88 chromosome, complete genomeaspartate carbamoyltransferase regulatory subunit2e-86317
NC_003413:603157:619025619025619483459Pyrococcus furiosus DSM 3638, complete genomeaspartate carbamoyltransferase regulatory subunit1e-30131
NC_015732:2880801:288801328880132888447435Spirochaeta caldaria DSM 7334 chromosome, complete genomeAspartate carbamoyltransferase regulatory subunit3e-1787.4
NC_014616:1065500:108972910897291090151423Bifidobacterium bifidum S17 chromosome, complete genomeaspartate carbamoyltransferase regulatory subunit 11e-1582
NC_010498:4821519:482620648262064826667462Escherichia coli SMS-3-5, complete genomeaspartate carbamoyltransferase, regulatory subunit2e-86317
NC_017517:98554:116874116874117332459Neisseria meningitidis M01-240355 chromosome, complete genomeaspartate carbamoyltransferase, regulatory subunit4e-37153
NC_016610:932746:938485938485938952468Tannerella forsythia ATCC 43037 chromosome, complete genomeaspartate carbamoyltransferase, regulatory subunit2e-26117
NC_015931:1405859:142207514220751422551477Pyrolobus fumarii 1A, complete genomeaspartate carbamoyltransferase, regulatory subunit5e-22103
NC_017275:1436875:146102914610291461508480Sulfolobus islandicus HVE10/4 chromosome, complete genomeaspartate carbamoyltransferase, regulatory subunit3e-1994
NC_012589:1502390:150622815062281506707480Sulfolobus islandicus L.S.2.15, complete genomeaspartate carbamoyltransferase, regulatory subunit3e-1994
NC_014633:583858:597245597245597682438Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequenceaspartate carbamoyltransferase, regulatory subunit7e-1785.9
NC_020063:4170464:418167741816774182138462Enterobacteriaceae bacterium strain FGI 57, complete genomeaspartate carbamoyltransferase, regulatory subunit7e-81298
NC_017518:98639:116362116362116820459Neisseria meningitidis NZ-05/33 chromosome, complete genomeaspartate carbamoyltransferase, regulatory subunit4e-37153
NC_014471:1303634:130746213074621307947486Ignisphaera aggregans DSM 17230 chromosome, complete genomeaspartate carbamoyltransferase, regulatory subunit2e-22104
NC_010520:3526883:352809535280953528535441Clostridium botulinum A3 str. Loch Maree, complete genomeaspartate carbamoyltransferase, regulatory subunit3e-1787
NC_010473:4564590:457081745708174571278462Escherichia coli str. K-12 substr. DH10B, complete genomeaspartate carbamoyltransferase, regulatory subunit2e-86317
NC_010334:835500:840811840811841269459Shewanella halifaxensis HAW-EB4, complete genomeaspartate carbamoyltransferase, regulatory subunit3e-42170
NC_017515:76861:121411121411121869459Neisseria meningitidis M04-240196 chromosome, complete genomeaspartate carbamoyltransferase, regulatory subunit4e-37153
NC_019960:907238:924577924577925032456Prevotella dentalis DSM 3688 chromosome 1, complete sequenceaspartate carbamoyltransferase, regulatory subunit3e-29127
NC_019977:253895:271639271639272133495Methanomethylovorans hollandica DSM 15978, complete genomeaspartate carbamoyltransferase, regulatory subunit8e-24108
NC_021182:1654903:165950716595071659929423Clostridium pasteurianum BC1, complete genomeaspartate carbamoyltransferase, regulatory subunit4e-1063.9
AC_000091:4472000:447566644756664476127462Escherichia coli W3110 DNA, complete genomeaspartate carbamoyltransferase, regulatory subunit2e-86317
NC_017516:96879:115437115437115895459Neisseria meningitidis H44/76 chromosome, complete genomeaspartate carbamoyltransferase, regulatory subunit4e-37153
NC_003112:96815:115373115373115831459Neisseria meningitidis MC58, complete genomeaspartate carbamoyltransferase, regulatory subunit4e-37153
NC_015311:2689118:270934927093492709804456Prevotella denticola F0289 chromosome, complete genomeaspartate carbamoyltransferase, regulatory subunit4e-25113
NC_013517:2815482:283303028330302833479450Sebaldella termitidis ATCC 33386, complete genomeaspartate carbamoyltransferase, regulatory subunit4e-21100
NC_013769:1478546:150269915026991503178480Sulfolobus islandicus L.D.8.5 chromosome, complete genomeaspartate carbamoyltransferase, regulatory subunit3e-1994
NC_003106:1457802:147823514782351478726492Sulfolobus tokodaii str. 7, complete genomehypothetical aspartate carbamoyltransferase regulatory subunit2e-2097.8
NC_007681:600187:617483617483617944462Methanosphaera stadtmanae DSM 3091, complete genomePyrI1e-28125
NC_011653:1574415:1589344158934415909211578Thermosipho africanus TCF52B, complete genomepyrimidine base biosynthetic protein9e-1062.4