Query: NC_010407:3132683 Clavibacter michiganensis subsp. sepedonicus chromosome, complete
Start: 3132683, End: 3154890, Length: 22208
Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria
General Information: Causative agent of bacterial ring rot. Isolated from infected potato. This organism was first described and classified in 1914 as "Bacterium sepedonicus" and is considered a major plant pathogen. It is a phytopathogenic actinomycete that causes wilt and tuber rot in potato, which is a plant vascular disease with very high bacterial titers. Pathogenicity is believed to be associated with the presence of two plasmids, pCSL1 and pCSL2. This species is subdivided into five subspecies: michiganensis, sepedonicus, nebraskensis, tesselarius and insidiosus each of which infects specific hosts: tomato, potato, corn, wheat and alfalfa, respectively. Members of the Clavibacter genus are known to produce antimicrobial compounds.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_010407:32960* | 32960 | 51633 | 18674 | Clavibacter michiganensis subsp. sepedonicus chromosome, complete | 0 | 1507 | BLASTN svg | BLASTP svg |
NC_010407:151599* | 151599 | 175589 | 23991 | Clavibacter michiganensis subsp. sepedonicus chromosome, complete | 0 | 1503 | BLASTN svg | BLASTP svg |
NC_010399:13222 | 13222 | 35599 | 22378 | Clavibacter michiganensis subsp. sepedonicus plasmid pCS1, complete | 0 | 1493 | BLASTN svg | BLASTP svg |
NC_010407:410918 | 410918 | 435272 | 24355 | Clavibacter michiganensis subsp. sepedonicus chromosome, complete | 0 | 1485 | BLASTN svg | BLASTP svg |
NC_010407:2406113 | 2406113 | 2424999 | 18887 | Clavibacter michiganensis subsp. sepedonicus chromosome, complete | 0 | 1485 | BLASTN svg | BLASTP svg |
NC_010407:3174470 | 3174470 | 3197545 | 23076 | Clavibacter michiganensis subsp. sepedonicus chromosome, complete | 0 | 1469 | BLASTN svg | BLASTP svg |
NC_010407:2038499 | 2038499 | 2056747 | 18249 | Clavibacter michiganensis subsp. sepedonicus chromosome, complete | 0 | 1455 | BLASTN svg | BLASTP svg |
NC_010408:79855 | 79855 | 105999 | 26145 | Clavibacter michiganensis subsp. sepedonicus plasmid pCSL1, | 6e-177 | 628 | BLASTN svg | BLASTP svg |
NC_009480:31412 | 31412 | 78542 | 47131 | Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete | 1e-140 | 507 | BLASTN svg | BLASTP svg |
NC_006087:885760 | 885760 | 912599 | 26840 | Leifsonia xyli subsp. xyli str. CTCB07, complete genome | 1e-94 | 355 | BLASTN svg | BLASTP svg |
NC_009479:34001 | 34001 | 56213 | 22213 | Clavibacter michiganensis subsp. michiganensis NCPPB 382 plasmid | 1e-66 | 262 | BLASTN svg | BLASTP svg |
NC_013131:7437831 | 7437831 | 7457300 | 19470 | Catenulispora acidiphila DSM 44928, complete genome | 4e-48 | 200 | BLASTN svg | BLASTP svg |
NC_009480:99640 | 99640 | 133801 | 34162 | Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete | 6e-41 | 176 | BLASTN svg | BLASTP svg |
NC_015671:3153325 | 3153325 | 3177599 | 24275 | Cellvibrio gilvus ATCC 13127 chromosome, complete genome | 9e-28 | 133 | BLASTN svg | BLASTP svg |
NC_015514:477935 | 477935 | 500795 | 22861 | Cellulomonas fimi ATCC 484 chromosome, complete genome | 3e-18 | 101 | BLASTN svg | BLASTP svg |
NC_015514:181773 | 181773 | 205349 | 23577 | Cellulomonas fimi ATCC 484 chromosome, complete genome | 3e-18 | 101 | BLASTN svg | BLASTP svg |
NC_010407:1775227 | 1775227 | 1800548 | 25322 | Clavibacter michiganensis subsp. sepedonicus chromosome, complete | 5e-17 | 97.6 | BLASTN svg | BLASTP svg |
NC_008712:250240 | 250240 | 268293 | 18054 | Arthrobacter aurescens TC1 plasmid TC1, complete sequence | 7e-13 | 83.8 | BLASTN svg | BLASTP svg |
NC_015125:3284095 | 3284095 | 3308099 | 24005 | Microbacterium testaceum StLB037, complete genome | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_010407:1114408 | 1114408 | 1138946 | 24539 | Clavibacter michiganensis subsp. sepedonicus chromosome, complete | 4e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_014924:2840310* | 2840310 | 2860070 | 19761 | Pseudoxanthomonas suwonensis 11-1 chromosome, complete genome | 7e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_014391:4644500 | 4644500 | 4669830 | 25331 | Micromonospora aurantiaca ATCC 27029 chromosome, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_014623:8648000 | 8648000 | 8670832 | 22833 | Stigmatella aurantiaca DW4/3-1 chromosome, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_013235:3913000 | 3913000 | 3932224 | 19225 | Nakamurella multipartita DSM 44233, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |