Pre_GI Gene

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Host: NC_009480 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009480:99640 Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete

Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Phytopathogen that causes bacterial wilt and canker of tomato (Lycopersicon esculentum). This is considered to be the most important bacterial disease of tomato causing substantial economic losses worldwide. Bacteria enter the plant by wounds on root or stem and then find their way into the xylem allowing a massive systemic colonization. The first stage of the disease is characterized by unilateral wilting of leaves. Wilting then spreads to all leaves, canker lesions develop on the stem and the plant dies. If infection occurs at a late stage of plant development, plants can survive and yield fruit that may have spots, so called bird's eyes. Often the seeds will be infected and this has been the major source for outbreaks of Clavibacter michiganensis subsp. michiganensis infections in agriculture. Members of the Clavibacter genus are known to produce antimicrobial compounds.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
996401027413102subtilisin-like serine protease peptidase family S8AQuickGO ontologyBLASTP
103428104384957hypothetical proteinBLASTP
106123106863741hypothetical proteinBLASTP
1073341088601527putative acyl-CoA synthetase AMP-formingQuickGO ontologyBLASTP
112168112389222hypothetical proteinBLASTP
113031114005975putative extracellular serine proteaseQuickGO ontologyBLASTP
114879115307429hypothetical protein
116970117137168hypothetical proteinBLASTP
1172131188711659putative NADH oxidaseQuickGO ontologyBLASTP
118888119187300hypothetical proteinBLASTP
119184119501318hypothetical proteinBLASTP
119736120527792putative short-chain dehydrogenasereductaseQuickGO ontologyBLASTP
1205381229252388putative beta-glucosidaseQuickGO ontologyBLASTP
1230701249081839putative beta-glucosidasebeta-xylosidaseQuickGO ontologyBLASTP
124978125889912putative sugar ABC transporter permease componentQuickGO ontologyBLASTP
1258861269681083putative sugar ABC transporter permease componentQuickGO ontologyBLASTP
1270431283201278putative sugar ABC transporter binding proteinQuickGO ontologyBLASTP
128542129288747transcriptional regulator TetR familyQuickGO ontologyBLASTP
1293771308221446putative beta-glucosidaseQuickGO ontologyBLASTP
1310481320761029putative LacI-family transcriptional regulatorQuickGO ontologyBLASTP
1321701338011632tomatinase endo-14-beta-glycosidaseQuickGO ontologyBLASTP