Pre_GI Gene

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Host: NC_010408 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010408:79855 Clavibacter michiganensis subsp. sepedonicus plasmid pCSL1,

Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Causative agent of bacterial ring rot. Isolated from infected potato. This organism was first described and classified in 1914 as "Bacterium sepedonicus" and is considered a major plant pathogen. It is a phytopathogenic actinomycete that causes wilt and tuber rot in potato, which is a plant vascular disease with very high bacterial titers. Pathogenicity is believed to be associated with the presence of two plasmids, pCSL1 and pCSL2. This species is subdivided into five subspecies: michiganensis, sepedonicus, nebraskensis, tesselarius and insidiosus each of which infects specific hosts: tomato, potato, corn, wheat and alfalfa, respectively. Members of the Clavibacter genus are known to produce antimicrobial compounds.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
36553975321hypothetical proteinBLASTP
41534380228hypothetical proteinBLASTP
43984586189hypothetical proteinBLASTP
48505383534hypothetical protein
54786320843hypothetical protein
65907543954putative DNA processing SMF-family proteinQuickGO ontologyBLASTP
76168026411hypothetical proteinBLASTP
81678514348LSR2-family proteinQuickGO ontologyBLASTP
857697961221probable major facilitator superfamily transporterQuickGO ontologyBLASTP
992310120198hypothetical protein
10137118521716ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
7985580124270hypothetical protein
8014780671525hypothetical proteinBLASTP
8067581517843hypothetical proteinBLASTP
8151482080567hypothetical protein
8218382443261hypothetical protein
8260182816216hypothetical protein
8282283349528hypothetical protein
8344483680237hypothetical protein
8392384429507hypothetical protein
8457584928354hypothetical protein
8499685376381hypothetical protein
8543585680246hypothetical protein
8573386491759hypothetical protein
8650787460954hypothetical protein
8760288261660hypothetical protein
8826589125861putative secreted proteinQuickGO ontologyBLASTP
8926090045786hypothetical protein
9020790395189hypothetical proteinBLASTP
9041390640228hypothetical proteinBLASTP
9081891138321hypothetical proteinBLASTP