Pre_GI Gene

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Host: NC_010407 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010407:1775227 Clavibacter michiganensis subsp. sepedonicus chromosome, complete

Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Causative agent of bacterial ring rot. Isolated from infected potato. This organism was first described and classified in 1914 as "Bacterium sepedonicus" and is considered a major plant pathogen. It is a phytopathogenic actinomycete that causes wilt and tuber rot in potato, which is a plant vascular disease with very high bacterial titers. Pathogenicity is believed to be associated with the presence of two plasmids, pCSL1 and pCSL2. This species is subdivided into five subspecies: michiganensis, sepedonicus, nebraskensis, tesselarius and insidiosus each of which infects specific hosts: tomato, potato, corn, wheat and alfalfa, respectively. Members of the Clavibacter genus are known to produce antimicrobial compounds.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
17752271776006780short chain dehydrogenaseQuickGO ontologyBLASTP
177614217781331992putative peptidaseQuickGO ontologyBLASTP
17781301778600471hypothetical proteinBLASTP
17786721779307636hypothetical protein
17793651780252888putative exported lipaseQuickGO ontology
17804351780929495hypothetical protein
17810791781348270hypothetical protein
178145617824931038LacI family transcriptional regulatorQuickGO ontologyBLASTP
178251517841611647putative xylosidasearabinosidaseQuickGO ontologyBLASTP
178433917856341296putative substrate-binding transportQuickGO ontologyBLASTP
17901481790474327hypothetical protein
179392717961912265putative glycosyl hydrolaseQuickGO ontologyBLASTP
179647017978101341putative integral membrane transport proteinQuickGO ontologyBLASTP
179781018005482739putative glycosyl hydrolaseQuickGO ontologyBLASTP