Pre_GI Gene

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Host: NC_010407 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010407:32960 Clavibacter michiganensis subsp. sepedonicus chromosome, complete

Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Causative agent of bacterial ring rot. Isolated from infected potato. This organism was first described and classified in 1914 as "Bacterium sepedonicus" and is considered a major plant pathogen. It is a phytopathogenic actinomycete that causes wilt and tuber rot in potato, which is a plant vascular disease with very high bacterial titers. Pathogenicity is believed to be associated with the presence of two plasmids, pCSL1 and pCSL2. This species is subdivided into five subspecies: michiganensis, sepedonicus, nebraskensis, tesselarius and insidiosus each of which infects specific hosts: tomato, potato, corn, wheat and alfalfa, respectively. Members of the Clavibacter genus are known to produce antimicrobial compounds.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
32960340031044hypothetical proteinBLASTP
34092359541863ATP-dependent DNA helicase RecQQuickGO ontologyBLASTP
36065372671203putative serine proteaseQuickGO ontologyBLASTP
37602410093408putative sortase-processed secreted proteinQuickGO ontologyBLASTP
4100641209204putative integral membrane proteinQuickGO ontology
4157141702132putative integral membrane proteinQuickGO ontology
4210642321216putative integral membrane proteinQuickGO ontologyBLASTP
4274543707963putative insertion element IS1121 transposaseQuickGO ontologyBLASTP
4380544287483putative mechanosensitive channelQuickGO ontologyBLASTP
4428444643360putative integral mebrane proteinQuickGO ontology
4474245317576putative 5-formyltetrahydrofolate cyclo-ligase-related proteinQuickGO ontologyBLASTP
4535846254897UTP-glucose-1-phosphate uridylyltransferaseQuickGO ontologyBLASTP
4631246980669putative GCN5-related N-acetyltransferaseQuickGO ontologyBLASTP
4707948047969putative integral membrane proteinQuickGO ontology
481614823373tRNA-AlaQuickGO ontology
50014516331620hypothetical proteinBLASTP