Pre_GI: BLASTP Hits

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Query: NC_010407:32960:42745 Clavibacter michiganensis subsp. sepedonicus chromosome, complete

Start: 42745, End: 43707, Length: 963

Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Causative agent of bacterial ring rot. Isolated from infected potato. This organism was first described and classified in 1914 as "Bacterium sepedonicus" and is considered a major plant pathogen. It is a phytopathogenic actinomycete that causes wilt and tuber rot in potato, which is a plant vascular disease with very high bacterial titers. Pathogenicity is believed to be associated with the presence of two plasmids, pCSL1 and pCSL2. This species is subdivided into five subspecies: michiganensis, sepedonicus, nebraskensis, tesselarius and insidiosus each of which infects specific hosts: tomato, potato, corn, wheat and alfalfa, respectively. Members of the Clavibacter genus are known to produce antimicrobial compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010407:151599:164242164242165204963Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative insertion element IS1121 transposase2e-147521
NC_010399:13222:228812288123843963Clavibacter michiganensis subsp. sepedonicus plasmid pCS1, completeputative transposase2e-147521
NC_010407:410918:425858425858426820963Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative insertion element IS1121 transposase9e-147519
NC_010407:3174470:317934031793403180302963Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative insertion element IS1121 transposase9e-147519
NC_010407:3174470:318889031888903189852963Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative insertion element IS1121 transposase2e-146518
NC_010399:13222:182471824719209963Clavibacter michiganensis subsp. sepedonicus plasmid pCS1, completeputative integrase2e-146518
NC_010407:2038499:204530220453022046264963Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative insertion element IS1121 transposase9e-146516
NC_010407:3132683:315392831539283154890963Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative insertion element IS1121 transposase2e-140498
NC_015514:181773:195606195606196601996Cellulomonas fimi ATCC 484 chromosome, complete genomeintegrase catalytic subunit1e-85316
NC_015514:477935:4917984917984928051008Cellulomonas fimi ATCC 484 chromosome, complete genomeintegrase catalytic subunit1e-85316
NC_015514:181773:188131188131189048918Cellulomonas fimi ATCC 484 chromosome, complete genomeintegrase catalytic subunit4e-75281
NC_014391:4644500:465256046525604653531972Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeIntegrase catalytic region7e-68257
NC_003888:5114147:5122836512283651238551020Streptomyces coelicolor A3(2), complete genomeIS1652 transposase7e-52204
NC_003888:6103534:613988761398876140843957Streptomyces coelicolor A3(2), complete genometransposase6e-52204
NC_003888:56225:773157731578271957Streptomyces coelicolor A3(2), complete genomeIS1652 transposase6e-52204
NC_003888:8613848:862323086232308624186957Streptomyces coelicolor A3(2), complete genomeinsertion element transposase5e-52204
NC_019673:6394319:643232664323266433324999Saccharothrix espanaensis DSM 44229 complete genomeTransposase1e-49197
NC_010407:1114408:113583311358331136795963Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative insertion element ISCmi2 transposase3e-48192
NC_013235:4091185:409404340940434095035993Nakamurella multipartita DSM 44233, complete genomeIntegrase catalytic region3e-47189
NC_008538:46469:489184891849847930Arthrobacter sp. FB24 plasmid 2, complete sequenceIntegrase, catalytic region2e-46186
NC_013169:2351475:235766823576682358624957Kytococcus sedentarius DSM 20547, complete genomeintegrase family protein1e-45184
NC_015859:1631573:164053216405321641488957Corynebacterium variabile DSM 44702 chromosome, complete genomehypothetical protein1e-45183
NC_015859:1631573:164736116473611648317957Corynebacterium variabile DSM 44702 chromosome, complete genomehypothetical protein1e-45183
NC_006361:3047788:3070716307071630717621047Nocardia farcinica IFM 10152, complete genomeputative transposase3e-45182
NC_017093:3777178:379027937902793791271993Actinoplanes missouriensis 431, complete genomeputative transposase1e-44180
NC_010617:774914:7878067878067888521047Kocuria rhizophila DC2201, complete genomeputative transposase1e-43177
NC_002929:52500:574985749858448951Bordetella pertussis Tohama I, complete genometransposase3e-43175
NC_002929:52500:690866908670036951Bordetella pertussis Tohama I, complete genometransposase3e-43175
NC_017223:51180:574985749858448951Bordetella pertussis CS chromosome, complete genometransposase3e-43175
NC_002929:3305682:331465533146553315605951Bordetella pertussis Tohama I, complete genometransposase3e-43175
NC_017223:3345902:335487533548753355825951Bordetella pertussis CS chromosome, complete genometransposase3e-43175
NC_002929:52500:776357763578585951Bordetella pertussis Tohama I, complete genometransposase3e-43175
NC_002929:2589202:259389925938992594849951Bordetella pertussis Tohama I, complete genometransposase3e-43175
NC_002929:3305682:331032833103283311278951Bordetella pertussis Tohama I, complete genometransposase3e-43175
NC_017223:3345902:335054833505483351498951Bordetella pertussis CS chromosome, complete genometransposase3e-43175
NC_017223:51180:776357763578585951Bordetella pertussis CS chromosome, complete genometransposase3e-43175
NC_015125:1136734:1146013114601311470171005Microbacterium testaceum StLB037, complete genometransposase and inactivated derivatives8e-43174
NC_008146:1748026:1788013178801317890891077Mycobacterium sp. MCS, complete genomeIntegrase, catalytic region2e-42172
NC_017223:2618535:261853526185352619485951Bordetella pertussis CS chromosome, complete genometransposase4e-42172
NC_017955:3731480:3775304377530437763441041Modestobacter marinus, complete genomehypothetical protein4e-42172
NC_017223:51180:690866908670036951Bordetella pertussis CS chromosome, complete genometransposase4e-42171
NC_018581:759932:771904771904772716813Gordonia sp. KTR9 chromosome, complete genomeTransposase-like protein1e-41170
NC_014215:2259290:2277795227779522787991005Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,Integrase, catalytic region5e-41168
NC_009656:3869281:3870241387024138716861446Pseudomonas aeruginosa PA7 chromosome, complete genometransposase8e-41167
NC_010617:774914:7895457895457905551011Kocuria rhizophila DC2201, complete genomeputative transposase2e-40166
NC_010617:774914:7984987984987995081011Kocuria rhizophila DC2201, complete genomeputative transposase2e-40166
NC_012803:1552122:1558163155816315591701008Micrococcus luteus NCTC 2665, complete genometransposase4e-40165
NC_008752:585884:593945593945594892948Acidovorax avenae subsp. citrulli AAC00-1, complete genomeIntegrase, catalytic region1e-38160
NC_008752:3684739:370578037057803706727948Acidovorax avenae subsp. citrulli AAC00-1, complete genomeIntegrase, catalytic region1e-38160
NC_008752:725189:733147733147734094948Acidovorax avenae subsp. citrulli AAC00-1, complete genomeIntegrase, catalytic region1e-38160
NC_008752:2334511:234988823498882350835948Acidovorax avenae subsp. citrulli AAC00-1, complete genomeIntegrase, catalytic region1e-38160
NC_015671:1865752:1872483187248318734901008Cellvibrio gilvus ATCC 13127 chromosome, complete genomeintegrase catalytic subunit2e-38159
NC_015671:3470903:3484356348435634853631008Cellvibrio gilvus ATCC 13127 chromosome, complete genomeintegrase catalytic subunit2e-38159
NC_014151:3611956:3645262364526236463171056Cellulomonas flavigena DSM 20109 chromosome, complete genomeIntegrase catalytic region2e-38159
NC_010515:2691000:271081027108102711760951Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceIntegrase catalytic region1e-37157
NC_014834:3130715:314021431402143141167954Rhodopseudomonas palustris DX-1 chromosome, complete genomeIntegrase catalytic subunit2e-37156
NC_008543:127675:135412135412136362951Burkholderia cenocepacia HI2424 chromosome 2, complete sequenceIntegrase, catalytic region3e-37155
NC_008061:2106848:213340921334092134359951Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceIntegrase, catalytic region3e-37155
NC_014151:3611956:3631363363136336323701008Cellulomonas flavigena DSM 20109 chromosome, complete genomeIntegrase catalytic region3e-37155
NC_010545:1781393:178694717869471787771825Corynebacterium urealyticum DSM 7109, complete genometransposase for insertion sequence3e-37155
NC_014151:856354:8627978627978638041008Cellulomonas flavigena DSM 20109 chromosome, complete genomeIntegrase catalytic region3e-37155
NC_010512:951527:958183958183959133951Burkholderia cenocepacia MC0-3 chromosome 3, complete sequenceIntegrase catalytic region3e-36152
NC_015563:3979500:399047239904723991419948Delftia sp. Cs1-4 chromosome, complete genomeintegrase catalytic subunit3e-36152
NC_009937:4392108:439582343958234396755933Azorhizobium caulinodans ORS 571, complete genomeputative insertion sequence transposase protein1e-34147
NC_009937:4350132:435470243547024355634933Azorhizobium caulinodans ORS 571, complete genometransposase1e-34147
NC_021064:816000:8267108267108277201011Propionibacterium avidum 44067, complete genomeintegrase catalytic subunit1e-34147
NC_011071:429204:429842429842430786945Stenotrophomonas maltophilia R551-3, complete genomeIntegrase catalytic region2e-34146
NC_010617:1467000:1477774147777414787811008Kocuria rhizophila DC2201, complete genomeputative transposase2e-33142
NC_002678:4618555:463827846382784639069792Mesorhizobium loti MAFF303099, complete genometransposase5e-31135
NC_010943:4476654:448185944818594482803945Stenotrophomonas maltophilia K279a, complete genomeputative transposase8e-31134
NC_006932:531000:535549535549536420872Brucella abortus biovar 1 str. 9-941 chromosome I, completeP1 ISBm38e-27121
NC_013169:1845735:185223418522341852767534Kytococcus sedentarius DSM 20547, complete genome1e-25117
NC_015422:1643000:164637916463791647326948Alicycliphilus denitrificans K601 chromosome, complete genomeintegrase catalytic subunit2e-25116
NC_008595:1844500:185254018525401853325786Mycobacterium avium 104, complete genometransposase2e-22106
NC_019673:6394319:639620163962016396893693Saccharothrix espanaensis DSM 44229 complete genomeTransposase2e-21103
NC_010169:527500:531917531917532860944Brucella suis ATCC 23445 chromosome I, complete sequencetransposase for insertion sequence element IS65012e-21103
NC_015857:531314:535385535385536328944Brucella pinnipedialis B2/94 chromosome chromosome 1, completeISBm3 transposase2e-21103
NC_004310:508483:513927513927514870944Brucella suis 1330 chromosome I, complete sequenceISBm3, transposase, programmed frameshift2e-21103
NC_007618:526400:531844531844532431588Brucella melitensis biovar Abortus 2308 chromosome I, completeBacterial regulatory protein LacI, HTH motif4e-21102
NC_017248:529500:534131534131534670540Brucella melitensis NI chromosome chromosome I, complete sequenceinsertion sequence transposase protein3e-21102
NC_010103:507482:512568512568513155588Brucella canis ATCC 23365 chromosome I, complete sequenceinsertion sequence transposase protein3e-21102
NC_012441:529500:534037534037534624588Brucella melitensis ATCC 23457 chromosome I, complete sequenceinsertion sequence transposase protein3e-21102
NC_017244:529500:534022534022534609588Brucella melitensis M28 chromosome chromosome 1, complete sequenceinsertion sequence transposase protein3e-21102
NC_017246:528825:534269534269534856588Brucella melitensis M5-90 chromosome chromosome I, completeinsertion sequence transposase protein3e-21102
NC_006361:2225072:2244167224416722451981032Nocardia farcinica IFM 10152, complete genomeputative transposase3e-1995.9
NC_010617:1910388:1916599191659919180261428Kocuria rhizophila DC2201, complete genomeputative transposase1e-1584.3
NC_010742:529500:534144534144534452309Brucella abortus S19 chromosome 1, complete sequenceBacterial regulatory protein LacI, HTH motif3e-1582.8
NC_015957:527777:539888539888540451564Streptomyces violaceusniger Tu 4113 chromosome, complete genome5e-1478.6
NC_006087:2326143:234629623462962346757462Leifsonia xyli subsp. xyli str. CTCB07, complete genome2e-1377
NC_006087:28490:355603556036021462Leifsonia xyli subsp. xyli str. CTCB07, complete genome2e-1377
NC_006087:345976:384942384942385403462Leifsonia xyli subsp. xyli str. CTCB07, complete genome2e-1377
NC_006087:28490:437174371744178462Leifsonia xyli subsp. xyli str. CTCB07, complete genometransposase, ISlxx42e-1377
NC_016947:70210:917919179192300510Mycobacterium intracellulare MOTT-02 chromosome, complete genomeputative transposase2e-1376.6
NC_006087:237500:243750243750244211462Leifsonia xyli subsp. xyli str. CTCB07, complete genome6e-1375.1
NC_017075:2689014:269241626924162692856441Rubrivivax gelatinosus IL144, complete genome7e-1375.1
NC_014215:2295500:230089723008972301514618Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,8e-1374.7
NC_017075:2689014:269190626919062692403498Rubrivivax gelatinosus IL144, complete genome2e-1273.9
NC_016947:70210:914069140691819414Mycobacterium intracellulare MOTT-02 chromosome, complete genomeputative transposase1e-1273.9
NC_006087:676318:682365682365682730366Leifsonia xyli subsp. xyli str. CTCB07, complete genome1e-1273.9
NC_006087:1483761:149153914915391491904366Leifsonia xyli subsp. xyli str. CTCB07, complete genome1e-1273.9
NC_008726:610000:6138536138536156461794Mycobacterium vanbaalenii PYR-1, complete genomeIntegrase, catalytic region2e-1273.6
NC_013929:5248000:5257558525755852593241767Streptomyces scabiei 87.22 chromosome, complete genomeintegrase5e-1272
NC_009454:2502724:2509867250986725109011035Pelotomaculum thermopropionicum SI, complete genomehypothetical protein4e-1065.9
NC_003155:4592000:4623466462346646252351770Streptomyces avermitilis MA-4680, complete genomeISmav2-like transposase5e-1065.5
NC_013169:87269:936919369194023333Kytococcus sedentarius DSM 20547, complete genome7e-1065.1
NC_002929:52500:704417044171259819Bordetella pertussis Tohama I, complete genome9e-1064.7
NC_017223:51180:704417044171259819Bordetella pertussis CS chromosome, complete genome9e-1064.7
NC_006087:177375:197647197647198036390Leifsonia xyli subsp. xyli str. CTCB07, complete genome1e-0963.9
NC_008595:1844500:185086618508661851156291Mycobacterium avium 104, complete genometransposase1e-0963.9
NC_009049:2131017:214060021406002141421822Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequenceIntegrase, catalytic region2e-0963.2
NC_009078:510525:530315530315530869555Burkholderia pseudomallei 1106a chromosome II, complete sequenceintegrase core domain protein6e-0962
NC_007435:2352954:236900423690042369693690Burkholderia pseudomallei 1710b chromosome II, complete sequenceIntegrase core domain protein6e-0961.6
NC_006351:520500:549075549075549788714Burkholderia pseudomallei K96243 chromosome 2, complete sequenceinsertion element hypothetical protein1e-0860.8
NC_004757:267165:2801522801522814651314Nitrosomonas europaea ATCC 19718, complete genomeIntegrase, catalytic core2e-0860.5
NC_010717:4787750:480498148049814805682702Xanthomonas oryzae pv. oryzae PXO99A, complete genomeintegrase core domain protein2e-0860.5
NC_004757:2730057:277582827758282776778951Nitrosomonas europaea ATCC 19718, complete genomeIntegrase, catalytic core2e-0860.1
NC_009454:1577319:163881816388181639744927Pelotomaculum thermopropionicum SI, complete genometransposase and inactivated derivatives2e-0859.7
NC_009074:1555500:156540415654041566273870Burkholderia pseudomallei 668 chromosome I, complete sequenceintegrase core domain protein2e-0859.7
NC_007434:1923000:193226719322671933088822Burkholderia pseudomallei 1710b chromosome I, complete sequenceIntegrase core domain protein3e-0859.7
NC_019673:8161242:818247781824778182881405Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein3e-0859.7
NC_014830:3275474:3288579328857932904381860Intrasporangium calvum DSM 43043 chromosome, complete genomeIntegrase catalytic region4e-0859.3
NC_013169:87269:101465101465101695231Kytococcus sedentarius DSM 20547, complete genome4e-0859.3
NC_017033:1672313:168350916835091684333825Frateuria aurantia DSM 6220 chromosome, complete genometransposase4e-0858.9
NC_017033:2081206:208842520884252089249825Frateuria aurantia DSM 6220 chromosome, complete genometransposase4e-0858.9
NC_010617:1910388:192070319207031921392690Kocuria rhizophila DC2201, complete genomehypothetical protein1e-0757.4
NC_014034:2253649:225552922555292256467939Rhodobacter capsulatus SB1003 chromosome, complete genome2e-0757
NC_009075:937782:951938951938952264327Burkholderia pseudomallei 668 chromosome II, complete sequenceintegrase core domain protein5e-0755.5
NC_014935:1999653:201796820179682018771804Nitratifractor saLSUginis DSM 16511 chromosome, complete genomeintegrase catalytic region6e-0755.1
NC_009937:3748885:376437737643773765210834Azorhizobium caulinodans ORS 571, complete genomeintegrase6e-0755.1
NC_010473:247429:2541572541572553111155Escherichia coli str. K-12 substr. DH10B, complete genomeCP4-6 prophage; predicted DNA-binding transcriptional regulator9e-0754.7
NC_000913:272071:2800532800532812071155Escherichia coli K12, complete genomeCP4-6 prophage; predicted DNA-binding transcriptional regulator9e-0754.7
AC_000091:273325:2800532800532812071155Escherichia coli W3110 DNA, complete genomepredicted DNA-binding transcriptional regulator9e-0754.7
NC_004113:1026886:1043098104309810441351038Thermosynechococcus elongatus BP-1, complete genomeputative transposase8e-0754.7
NC_009429:401500:406475406475406999525Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, completehypothetical protein1e-0653.9
NC_009428:1827352:187073418707341871558825Rhodobacter sphaeroides ATCC 17025 chromosome, complete genomehypothetical protein3e-0653.1
NC_007356:1165760:117396711739671174770804Dehalococcoides sp. CBDB1, complete genometransposase orfB5e-0652.4
NC_012856:1080000:108013410801341080964831Ralstonia pickettii 12D chromosome 1, complete genomeIntegrase catalytic region5e-0652
NC_010571:2423732:244156924415692442465897Opitutus terrae PB90-1, complete genomeIntegrase catalytic region5e-0652
NC_014924:3065430:307094230709423071577636Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeIntegrase catalytic region7e-0651.6
NC_012730:332500:3502823502823513761095Rickettsia peacockii str. Rustic, complete genometransposase ISRpe17e-0651.6
NC_020911:2998000:300418430041843005179996Octadecabacter antarcticus 307, complete genome1e-0551.2